Eisen MB - Search Results

1

In vivo enhancer analysis of human conserved non-coding sequences.

Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM. Pennacchio LA, et al. Among authors: eisen mb. Nature. 2006 Nov 23;444(7118):499-502. doi: 10.1038/nature05295. Epub 2006 Nov 5. Nature. 2006. PMID: 17086198 Free article.

2

Primate-specific evolution of an LDLR enhancer.

Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S, Brown M, Eisen MB, Cheng JF, Rubin EM, Boffelli D. Wang QF, et al. Among authors: eisen mb. Genome Biol. 2006;7(8):R68. doi: 10.1186/gb-2006-7-8-R68. Epub 2006 Aug 2. Genome Biol. 2006. PMID: 16884525 Free PMC article.

3

Position specific variation in the rate of evolution in transcription factor binding sites.

Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB. Moses AM, et al. Among authors: eisen mb. BMC Evol Biol. 2003 Aug 28;3:19. doi: 10.1186/1471-2148-3-19. Epub 2003 Aug 28. BMC Evol Biol. 2003. PMID: 12946282 Free PMC article.

4

Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.

Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB. Chiang DY, et al. Among authors: eisen mb. Genome Biol. 2003;4(7):R43. doi: 10.1186/gb-2003-4-7-r43. Epub 2003 Jun 26. Genome Biol. 2003. PMID: 12844359 Free PMC article.

5

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.

Moses AM, Chiang DY, Pollard DA, Iyer VN, Eisen MB. Moses AM, et al. Among authors: eisen mb. Genome Biol. 2004;5(12):R98. doi: 10.1186/gb-2004-5-12-r98. Epub 2004 Nov 30. Genome Biol. 2004. PMID: 15575972 Free PMC article.

6

Conservation and evolution of cis-regulatory systems in ascomycete fungi.

Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, Eisen MB. Gasch AP, et al. Among authors: eisen mb. PLoS Biol. 2004 Dec;2(12):e398. doi: 10.1371/journal.pbio.0020398. Epub 2004 Nov 9. PLoS Biol. 2004. PMID: 15534694 Free PMC article.

7

Large-scale turnover of functional transcription factor binding sites in Drosophila.

Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY, Biggin MD, Eisen MB. Moses AM, et al. Among authors: eisen mb. PLoS Comput Biol. 2006 Oct;2(10):e130. doi: 10.1371/journal.pcbi.0020130. Epub 2006 Aug 21. PLoS Comput Biol. 2006. PMID: 17040121 Free PMC article.

8

Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.

Shultzaberger RK, Chiang DY, Moses AM, Eisen MB. Shultzaberger RK, et al. Among authors: eisen mb. PLoS One. 2007 Nov 21;2(11):e1199. doi: 10.1371/journal.pone.0001199. PLoS One. 2007. PMID: 18030333 Free PMC article.

9

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.

Pollard DA, Moses AM, Iyer VN, Eisen MB. Pollard DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2006 Aug 14;7:376. doi: 10.1186/1471-2105-7-376. BMC Bioinformatics. 2006. PMID: 16904011 Free PMC article.

10

Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting.

Pollard DA, Iyer VN, Moses AM, Eisen MB. Pollard DA, et al. Among authors: eisen mb. PLoS Genet. 2006 Oct 27;2(10):e173. doi: 10.1371/journal.pgen.0020173. Epub 2006 Aug 28. PLoS Genet. 2006. PMID: 17132051 Free PMC article.

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