Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

162 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.
Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW. Luengo Hendriks CL, et al. Among authors: eisen mb. Genome Biol. 2006;7(12):R123. doi: 10.1186/gb-2006-7-12-r123. Genome Biol. 2006. PMID: 17184546 Free PMC article.
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD. Li XY, et al. Among authors: eisen mb. PLoS Biol. 2008 Feb;6(2):e27. doi: 10.1371/journal.pbio.0060027. PLoS Biol. 2008. PMID: 18271625 Free PMC article.
A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. Fowlkes CC, et al. Among authors: eisen mb. Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053. Cell. 2008. PMID: 18423206 Free article.
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.
MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keränen SV, Knowles DW, Stapleton M, Bickel P, Biggin MD, Eisen MB. MacArthur S, et al. Among authors: eisen mb. Genome Biol. 2009;10(7):R80. doi: 10.1186/gb-2009-10-7-r80. Epub 2009 Jul 23. Genome Biol. 2009. PMID: 19627575 Free PMC article.
Integrating data clustering and visualization for the analysis of 3D gene expression data.
Rübel O, Weber GH, Huang MY, Bethel EW, Biggin MD, Fowlkes CC, Luengo Hendriks CL, Keränen SV, Eisen MB, Knowles DW, Malik J, Hagen H, Hamann B. Rübel O, et al. Among authors: eisen mb. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):64-79. doi: 10.1109/TCBB.2008.49. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20150669
A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.
Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH. Fowlkes CC, et al. Among authors: eisen mb. PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27. PLoS Genet. 2011. PMID: 22046143 Free PMC article.
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila.
Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE. Fisher WW, et al. Among authors: eisen mb. Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21330-5. doi: 10.1073/pnas.1209589110. Epub 2012 Dec 10. Proc Natl Acad Sci U S A. 2012. PMID: 23236164 Free PMC article.
Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data.
Rübel O, Ahern S, Bethel EW, Biggin MD, Childs H, Cormier-Michel E, Depace A, Eisen MB, Fowlkes CC, Geddes CG, Hagen H, Hamann B, Huang MY, Keränen SV, Knowles DW, Hendriks CL, Malik J, Meredith J, Messmer P, Prabhat, Ushizima D, Weber GH, Wu K. Rübel O, et al. Among authors: eisen mb. Procedia Comput Sci. 2010 May;1(1):1757-1764. doi: 10.1016/j.procs.2010.04.197. Procedia Comput Sci. 2010. PMID: 23762211 Free PMC article.
162 results