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Transmembrane helix: simple or complex.
Wong WC, Maurer-Stroh S, Schneider G, Eisenhaber F. Wong WC, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W370-5. doi: 10.1093/nar/gks379. Epub 2012 May 7. Nucleic Acids Res. 2012. PMID: 22564899 Free PMC article.
On filtering false positive transmembrane protein predictions.
Cserzö M, Eisenhaber F, Eisenhaber B, Simon I. Cserzö M, et al. Protein Eng. 2002 Sep;15(9):745-52. doi: 10.1093/protein/15.9.745. Protein Eng. 2002. PMID: 12456873
Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.
Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S. Tan J, et al. Bioinformatics. 2012 Jun 15;28(12):1645-6. doi: 10.1093/bioinformatics/bts197. Epub 2012 Apr 23. Bioinformatics. 2012. PMID: 22531216 Free PMC article.
AllerCatPro-prediction of protein allergenicity potential from the protein sequence.
Maurer-Stroh S, Krutz NL, Kern PS, Gunalan V, Nguyen MN, Limviphuvadh V, Eisenhaber F, Gerberick GF. Maurer-Stroh S, et al. Among authors: Eisenhaber F. Bioinformatics. 2019 Sep 1;35(17):3020-3027. doi: 10.1093/bioinformatics/btz029. Bioinformatics. 2019. PMID: 30657872 Free PMC article.
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