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Extending Asia Pacific bioinformatics into new realms in the "-omics" era.
Ranganathan S, Eisenhaber F, Tong JC, Tan TW. Ranganathan S, et al. BMC Genomics. 2009 Dec 3;10 Suppl 3(Suppl 3):S1. doi: 10.1186/1471-2164-10-S3-S1. BMC Genomics. 2009. PMID: 19958472 Free PMC article.
On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.
Wong WC, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Wong WC, et al. BMC Bioinformatics. 2014 Jun 2;15:166. doi: 10.1186/1471-2105-15-166. BMC Bioinformatics. 2014. PMID: 24890864 Free PMC article.
Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.
Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S. Tan J, et al. Bioinformatics. 2012 Jun 15;28(12):1645-6. doi: 10.1093/bioinformatics/bts197. Epub 2012 Apr 23. Bioinformatics. 2012. PMID: 22531216 Free PMC article.
AllerCatPro-prediction of protein allergenicity potential from the protein sequence.
Maurer-Stroh S, Krutz NL, Kern PS, Gunalan V, Nguyen MN, Limviphuvadh V, Eisenhaber F, Gerberick GF. Maurer-Stroh S, et al. Among authors: eisenhaber f. Bioinformatics. 2019 Sep 1;35(17):3020-3027. doi: 10.1093/bioinformatics/btz029. Bioinformatics. 2019. PMID: 30657872 Free PMC article.
HPMV: human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes.
Sherman WA, Kuchibhatla DB, Limviphuvadh V, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Sherman WA, et al. J Bioinform Comput Biol. 2015 Oct;13(5):1550028. doi: 10.1142/S0219720015500286. Epub 2015 Oct 27. J Bioinform Comput Biol. 2015. PMID: 26503432
Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding ("Huf-Zinc") motif.
Maurer-Stroh S, Gao H, Han H, Baeten L, Schymkowitz J, Rousseau F, Zhang L, Eisenhaber F. Maurer-Stroh S, et al. J Bioinform Comput Biol. 2013 Feb;11(1):1340008. doi: 10.1142/S0219720013400088. Epub 2013 Jan 16. J Bioinform Comput Biol. 2013. PMID: 23427990
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