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A native chemical ligation handle that enables the synthesis of advanced activity-based probes: diubiquitin as a case study.
Mulder MP, El Oualid F, ter Beek J, Ovaa H. Mulder MP, et al. Among authors: el oualid f. Chembiochem. 2014 May 5;15(7):946-9. doi: 10.1002/cbic.201402012. Epub 2014 Mar 12. Chembiochem. 2014. PMID: 24623714 Free PMC article.
Nonhydrolyzable ubiquitin-isopeptide isosteres as deubiquitinating enzyme probes.
Shanmugham A, Fish A, Luna-Vargas MP, Faesen AC, El Oualid F, Sixma TK, Ovaa H. Shanmugham A, et al. Among authors: el oualid f. J Am Chem Soc. 2010 Jul 7;132(26):8834-5. doi: 10.1021/ja101803s. J Am Chem Soc. 2010. PMID: 20540574
Chemical synthesis of ubiquitin, ubiquitin-based probes, and diubiquitin.
El Oualid F, Merkx R, Ekkebus R, Hameed DS, Smit JJ, de Jong A, Hilkmann H, Sixma TK, Ovaa H. El Oualid F, et al. Angew Chem Int Ed Engl. 2010 Dec 27;49(52):10149-53. doi: 10.1002/anie.201005995. Angew Chem Int Ed Engl. 2010. PMID: 21117055 Free PMC article. No abstract available.
The differential modulation of USP activity by internal regulatory domains, interactors and eight ubiquitin chain types.
Faesen AC, Luna-Vargas MP, Geurink PP, Clerici M, Merkx R, van Dijk WJ, Hameed DS, El Oualid F, Ovaa H, Sixma TK. Faesen AC, et al. Among authors: el oualid f. Chem Biol. 2011 Dec 23;18(12):1550-61. doi: 10.1016/j.chembiol.2011.10.017. Chem Biol. 2011. PMID: 22195557
A general chemical ligation approach towards isopeptide-linked ubiquitin and ubiquitin-like assay reagents.
Geurink PP, El Oualid F, Jonker A, Hameed DS, Ovaa H. Geurink PP, et al. Among authors: el oualid f. Chembiochem. 2012 Jan 23;13(2):293-7. doi: 10.1002/cbic.201100706. Epub 2011 Dec 23. Chembiochem. 2012. PMID: 22213387 Free PMC article. No abstract available.
Synthesis and evaluation of a selective fluorogenic Pup derived assay reagent for Dop, a potential drug target in Mycobacterium tuberculosis.
Merkx R, Burns KE, Slobbe P, El Oualid F, El Atmioui D, Darwin KH, Ovaa H. Merkx R, et al. Among authors: el oualid f, el atmioui d. Chembiochem. 2012 Sep 24;13(14):2056-60. doi: 10.1002/cbic.201200460. Epub 2012 Aug 24. Chembiochem. 2012. PMID: 22927162 Free PMC article.
Mechanism of UCH-L5 activation and inhibition by DEUBAD domains in RPN13 and INO80G.
Sahtoe DD, van Dijk WJ, El Oualid F, Ekkebus R, Ovaa H, Sixma TK. Sahtoe DD, et al. Among authors: el oualid f. Mol Cell. 2015 Mar 5;57(5):887-900. doi: 10.1016/j.molcel.2014.12.039. Epub 2015 Feb 19. Mol Cell. 2015. PMID: 25702870 Free PMC article.
A cascading activity-based probe sequentially targets E1-E2-E3 ubiquitin enzymes.
Mulder MP, Witting K, Berlin I, Pruneda JN, Wu KP, Chang JG, Merkx R, Bialas J, Groettrup M, Vertegaal AC, Schulman BA, Komander D, Neefjes J, El Oualid F, Ovaa H. Mulder MP, et al. Among authors: el oualid f. Nat Chem Biol. 2016 Jul;12(7):523-30. doi: 10.1038/nchembio.2084. Epub 2016 May 16. Nat Chem Biol. 2016. PMID: 27182664 Free PMC article.
Polyubiquitin-Photoactivatable Crosslinking Reagents for Mapping Ubiquitin Interactome Identify Rpn1 as a Proteasome Ubiquitin-Associating Subunit.
Chojnacki M, Mansour W, Hameed DS, Singh RK, El Oualid F, Rosenzweig R, Nakasone MA, Yu Z, Glaser F, Kay LE, Fushman D, Ovaa H, Glickman MH. Chojnacki M, et al. Among authors: el oualid f. Cell Chem Biol. 2017 Apr 20;24(4):443-457.e6. doi: 10.1016/j.chembiol.2017.02.013. Epub 2017 Mar 16. Cell Chem Biol. 2017. PMID: 28330605 Free PMC article.
A Linear Diubiquitin-Based Probe for Efficient and Selective Detection of the Deubiquitinating Enzyme OTULIN.
Weber A, Elliott PR, Pinto-Fernandez A, Bonham S, Kessler BM, Komander D, El Oualid F, Krappmann D. Weber A, et al. Among authors: el oualid f. Cell Chem Biol. 2017 Oct 19;24(10):1299-1313.e7. doi: 10.1016/j.chembiol.2017.08.006. Epub 2017 Sep 14. Cell Chem Biol. 2017. PMID: 28919039 Free PMC article.
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