Emily K Stroup[Author] - Search Results

Year	Number of Results
2018	3
2019	3
2020	1
2022	2
2023	4
2024	3

1

Deep learning of human polyadenylation sites at nucleotide resolution reveals molecular determinants of site usage and relevance in disease.

Stroup EK, Ji Z. Stroup EK, et al. Nat Commun. 2023 Nov 15;14(1):7378. doi: 10.1038/s41467-023-43266-3. Nat Commun. 2023. PMID: 37968271 Free PMC article.

2

Towards precision medicine: advances in 5-hydroxymethylcytosine cancer biomarker discovery in liquid biopsy.

Zeng C, Stroup EK, Zhang Z, Chiu BC, Zhang W. Zeng C, et al. Cancer Commun (Lond). 2019 Mar 29;39(1):12. doi: 10.1186/s40880-019-0356-x. Cancer Commun (Lond). 2019. PMID: 30922396 Free PMC article. Review.

3

Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features.

Yang H, Li Q, Stroup EK, Wang S, Ji Z. Yang H, et al. Among authors: stroup ek. Nat Commun. 2024 Mar 2;15(1):1932. doi: 10.1038/s41467-024-46240-9. Nat Commun. 2024. PMID: 38431639 Free PMC article.

4

Rfoot-seq: Transcriptomic RNase Footprinting for Mapping Stable RNA-Protein Complexes and Rapid Ribosome Profiling.

Li Q, Stroup EK, Ji Z. Li Q, et al. Among authors: stroup ek. Curr Protoc. 2023 Apr;3(4):e761. doi: 10.1002/cpz1.761. Curr Protoc. 2023. PMID: 37097194 Free PMC article.

5

Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation.

Li Q, Yang H, Stroup EK, Wang H, Ji Z. Li Q, et al. Among authors: stroup ek. Genome Res. 2022 Mar;32(3):545-557. doi: 10.1101/gr.276139.121. Epub 2022 Feb 22. Genome Res. 2022. PMID: 35193938 Free PMC article.

6

Delineating yeast cleavage and polyadenylation signals using deep learning.

Stroup EK, Ji Z. Stroup EK, et al. bioRxiv [Preprint]. 2023 Oct 13:2023.10.10.561764. doi: 10.1101/2023.10.10.561764. bioRxiv. 2023. Update in: Genome Res. 2024 Aug 20;34(7):1066-1080. doi: 10.1101/gr.278606.123. PMID: 37873420 Free PMC article. Updated. Preprint.

7

Corrigendum: Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation.

Li Q, Yang H, Stroup EK, Wang H, Ji Z. Li Q, et al. Among authors: stroup ek. Genome Res. 2022 May;32(5):1015. doi: 10.1101/gr.276750.122. Genome Res. 2022. PMID: 35545441 Free PMC article. No abstract available.

8

Delineating yeast cleavage and polyadenylation signals using deep learning.

Stroup EK, Ji Z. Stroup EK, et al. Genome Res. 2024 Aug 20;34(7):1066-1080. doi: 10.1101/gr.278606.123. Genome Res. 2024. PMID: 38914436

9

Distinct DICER1 Hotspot Mutations Identify Bilateral Tumors as Separate Events.

Chen KS, Stuart SH, Stroup EK, Shukla AS, Wang J, Rajaram V, Vujanic GM, Slone T, Rakheja D, Amatruda JF. Chen KS, et al. Among authors: stroup ek. JCO Precis Oncol. 2018;2:PO.17.00113. doi: 10.1200/PO.17.00113. Epub 2018 Apr 25. JCO Precis Oncol. 2018. PMID: 31893257 Free PMC article. No abstract available.

10

Mutations in microRNA processing genes in Wilms tumors derepress the IGF2 regulator PLAG1.

Chen KS, Stroup EK, Budhipramono A, Rakheja D, Nichols-Vinueza D, Xu L, Stuart SH, Shukla AA, Fraire C, Mendell JT, Amatruda JF. Chen KS, et al. Among authors: stroup ek. Genes Dev. 2018 Aug 1;32(15-16):996-1007. doi: 10.1101/gad.313783.118. Epub 2018 Jul 19. Genes Dev. 2018. PMID: 30026293 Free PMC article.

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