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QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, North AJ, Rasse TM, Resch-Genger U, Schuetz LC, Seitz A, Strambio-De-Castillia C, Swedlow JR, Alexopoulos I, Aumayr K, Avilov S, Bakker GJ, Bammann RR, Bassi A, Beckert H, Beer S, Belyaev Y, Bierwagen J, Birngruber KA, Bosch M, Breitlow J, Cameron LA, Chalfoun J, Chambers JJ, Chen CL, Conde-Sousa E, Corbett AD, Cordelieres FP, Nery ED, Dietzel R, Eismann F, Fazeli E, Felscher A, Fried H, Gaudreault N, Goh WI, Guilbert T, Hadleigh R, Hemmerich P, Holst GA, Itano MS, Jaffe CB, Jambor HK, Jarvis SC, Keppler A, Kirchenbuechler D, Kirchner M, Kobayashi N, Krens G, Kunis S, Lacoste J, Marcello M, Martins GG, Metcalf DJ, Mitchell CA, Moore J, Mueller T, Nelson MS, Ogg S, Onami S, Palmer AL, Paul-Gilloteaux P, Pimentel JA, Plantard L, Podder S, Rexhepaj E, Royon A, Saari MA, Schapman D, Schoonderwoert V, Schroth-Diez B, Schwartz S, Shaw M, Spitaler M, Stoeckl MT, Sudar D, Teillon J, Terjung S, Thuenauer R, Wilms CD, Wright GD, Nitschke R. Nelson G, et al. Among authors: eriksson je. J Microsc. 2021 Oct;284(1):56-73. doi: 10.1111/jmi.13041. Epub 2021 Aug 11. J Microsc. 2021. PMID: 34214188 Free PMC article.
Image Quality Ranking Method for Microscopy.
Koho S, Fazeli E, Eriksson JE, Hänninen PE. Koho S, et al. Among authors: eriksson je. Sci Rep. 2016 Jul 1;6:28962. doi: 10.1038/srep28962. Sci Rep. 2016. PMID: 27364703 Free PMC article.
Erratum: Image Quality Ranking Method for Microscopy.
Koho S, Fazeli E, Eriksson JE, Hänninen PE. Koho S, et al. Among authors: eriksson je. Sci Rep. 2016 Aug 19;6:30863. doi: 10.1038/srep30863. Sci Rep. 2016. PMID: 27541184 Free PMC article. No abstract available.
Automated cell tracking using StarDist and TrackMate.
Fazeli E, Roy NH, Follain G, Laine RF, von Chamier L, Hänninen PE, Eriksson JE, Tinevez JY, Jacquemet G. Fazeli E, et al. Among authors: eriksson je. F1000Res. 2020 Oct 28;9:1279. doi: 10.12688/f1000research.27019.1. eCollection 2020. F1000Res. 2020. PMID: 33224481 Free PMC article.
QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.
Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, North AJ, Rasse TM, Resch-Genger U, Schuetz LC, Seitz A, Strambio-De-Castillia C, Swedlow JR, Nitschke R. Boehm U, et al. Among authors: eriksson je. Nat Methods. 2021 Dec;18(12):1423-1426. doi: 10.1038/s41592-021-01162-y. Nat Methods. 2021. PMID: 34021279 Free PMC article.
Author Correction: QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.
Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, North AJ, Rasse TM, Resch-Genger U, Schuetz LC, Seitz A, Strambio-De-Castillia C, Swedlow JR, Nitschke R. Boehm U, et al. Among authors: eriksson je. Nat Methods. 2022 Feb;19(2):256. doi: 10.1038/s41592-021-01387-x. Nat Methods. 2022. PMID: 34980905 No abstract available.
Building a FAIR image data ecosystem for microscopy communities.
Kemmer I, Keppler A, Serrano-Solano B, Rybina A, Özdemir B, Bischof J, El Ghadraoui A, Eriksson JE, Mathur A. Kemmer I, et al. Among authors: eriksson je. Histochem Cell Biol. 2023 Sep;160(3):199-209. doi: 10.1007/s00418-023-02203-7. Epub 2023 Jun 21. Histochem Cell Biol. 2023. PMID: 37341795 Free PMC article. Review.
Sphingolipids inhibit vimentin-dependent cell migration.
Hyder CL, Kemppainen K, Isoniemi KO, Imanishi SY, Goto H, Inagaki M, Fazeli E, Eriksson JE, Törnquist K. Hyder CL, et al. Among authors: eriksson je. J Cell Sci. 2015 Jun 1;128(11):2057-69. doi: 10.1242/jcs.160341. Epub 2015 Apr 23. J Cell Sci. 2015. PMID: 25908861
Vimentin-ERK Signaling Uncouples Slug Gene Regulatory Function.
Virtakoivu R, Mai A, Mattila E, De Franceschi N, Imanishi SY, Corthals G, Kaukonen R, Saari M, Cheng F, Torvaldson E, Kosma VM, Mannermaa A, Muharram G, Gilles C, Eriksson J, Soini Y, Lorens JB, Ivaska J. Virtakoivu R, et al. Cancer Res. 2015 Jun 1;75(11):2349-62. doi: 10.1158/0008-5472.CAN-14-2842. Epub 2015 Apr 8. Cancer Res. 2015. PMID: 25855378
182 results