Search Page

1

Cite

Share

A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data.

Hobbs ET, Pereira T, O'Neill PK, Erill I. Hobbs ET, et al. Among authors: erill i. Algorithms Mol Biol. 2016 Jul 8;11:19. doi: 10.1186/s13015-016-0082-8. eCollection 2016. Algorithms Mol Biol. 2016. PMID: 27398089 Free PMC article.

Cite

Share

2

Cite

Share

xFITOM: a generic GUI tool to search for transcription factor binding sites.

Bhargava N, Erill I. Bhargava N, et al. Among authors: erill i. Bioinformation. 2010 Jul 6;5(2):49-51. doi: 10.6026/97320630005049. Bioinformation. 2010. PMID: 21346861 Free PMC article.

Cite

Share

3

Cite

Share

Inference of self-regulated transcriptional networks by comparative genomics.

Cornish JP, Matthews F, Thomas JR, Erill I. Cornish JP, et al. Among authors: erill i. Evol Bioinform Online. 2012;8:449-61. doi: 10.4137/EBO.S9205. Epub 2012 Aug 6. Evol Bioinform Online. 2012. PMID: 23032607 Free PMC article.

Cite

Share

4

Cite

Share

CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria.

Kiliç S, White ER, Sagitova DM, Cornish JP, Erill I. Kiliç S, et al. Among authors: erill i. Nucleic Acids Res. 2014 Jan;42(Database issue):D156-60. doi: 10.1093/nar/gkt1123. Epub 2013 Nov 14. Nucleic Acids Res. 2014. PMID: 24234444 Free PMC article.

Cite

Share

5

Cite

Share

Characterization of the SOS meta-regulon in the human gut microbiome.

Cornish JP, Sanchez-Alberola N, O'Neill PK, O'Keefe R, Gheba J, Erill I. Cornish JP, et al. Among authors: erill i. Bioinformatics. 2014 May 1;30(9):1193-7. doi: 10.1093/bioinformatics/btt753. Epub 2014 Jan 8. Bioinformatics. 2014. PMID: 24407225 Free PMC article.

Cite

Share

6

Cite

Share

Informational requirements for transcriptional regulation.

O'Neill PK, Forder R, Erill I. O'Neill PK, et al. Among authors: erill i. J Comput Biol. 2014 May;21(5):373-84. doi: 10.1089/cmb.2014.0032. Epub 2014 Apr 1. J Comput Biol. 2014. PMID: 24689750 Free PMC article.

Cite

Share

7

Cite

Share

Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae.

Zamorano-Sánchez D, Fong JC, Kilic S, Erill I, Yildiz FH. Zamorano-Sánchez D, et al. Among authors: erill i. J Bacteriol. 2015 Apr;197(7):1221-35. doi: 10.1128/JB.02439-14. Epub 2015 Jan 26. J Bacteriol. 2015. PMID: 25622616 Free PMC article.

Cite

Share

8

Cite

Share

An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria.

Sanchez-Alberola N, Campoy S, Emerson D, Barbé J, Erill I. Sanchez-Alberola N, et al. Among authors: erill i. J Bacteriol. 2015 Aug;197(16):2622-30. doi: 10.1128/JB.00035-15. Epub 2015 May 18. J Bacteriol. 2015. PMID: 25986903 Free PMC article.

Cite

Share

9

Cite

Share

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.

Kılıç S, Sagitova DM, Wolfish S, Bely B, Courtot M, Ciufo S, Tatusova T, O'Donovan C, Chibucos MC, Martin MJ, Erill I. Kılıç S, et al. Among authors: erill i. Database (Oxford). 2016 Apr 25;2016:baw055. doi: 10.1093/database/baw055. Print 2016. Database (Oxford). 2016. PMID: 27114493 Free PMC article.

Cite

Share

10

Cite

Share

The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response.

Erill I, Campoy S, Kılıç S, Barbé J. Erill I, et al. Front Mol Biosci. 2016 Jul 20;3:33. doi: 10.3389/fmolb.2016.00033. eCollection 2016. Front Mol Biosci. 2016. PMID: 27489856 Free PMC article.

Cite

Share