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159 results
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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.
Bahar I, Atilgan AR, Erman B. Bahar I, et al. Among authors: erman b. Fold Des. 1997;2(3):173-81. doi: 10.1016/S1359-0278(97)00024-2. Fold Des. 1997. PMID: 9218955
Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.
Bahar I, Erman B, Haliloglu T, Jernigan RL. Bahar I, et al. Among authors: erman b. Biochemistry. 1997 Nov 4;36(44):13512-23. doi: 10.1021/bi971611f. Biochemistry. 1997. PMID: 9354619 Review.
Identification of kinetically hot residues in proteins.
Demirel MC, Atilgan AR, Jernigan RL, Erman B, Bahar I. Demirel MC, et al. Among authors: erman b. Protein Sci. 1998 Dec;7(12):2522-32. doi: 10.1002/pro.5560071205. Protein Sci. 1998. PMID: 9865946 Free PMC article.
Folding dynamics of proteins from denatured to native state: principal component analysis.
Palazoglu A, Gursoy A, Arkun Y, Erman B. Palazoglu A, et al. Among authors: erman b. J Comput Biol. 2004;11(6):1149-68. doi: 10.1089/cmb.2004.11.1149. J Comput Biol. 2004. PMID: 15662203
Optimum folding pathways of proteins: their determination and properties.
Güner U, Arkun Y, Erman B. Güner U, et al. Among authors: erman b. J Chem Phys. 2006 Apr 7;124(13):134911. doi: 10.1063/1.2181976. J Chem Phys. 2006. PMID: 16613481
The gaussian network model: precise prediction of residue fluctuations and application to binding problems.
Erman B. Erman B. Biophys J. 2006 Nov 15;91(10):3589-99. doi: 10.1529/biophysj.106.090803. Epub 2006 Aug 25. Biophys J. 2006. PMID: 16935951 Free PMC article.
Optimum folding pathways for growing protein chains.
Senturk S, Baday S, Arkun Y, Erman B. Senturk S, et al. Among authors: erman b. Phys Biol. 2007 Nov 26;4(4):305-16. doi: 10.1088/1478-3975/4/4/007. Phys Biol. 2007. PMID: 18185008
Prediction of binding sites in receptor-ligand complexes with the Gaussian Network Model.
Haliloglu T, Seyrek E, Erman B. Haliloglu T, et al. Among authors: erman b. Phys Rev Lett. 2008 Jun 6;100(22):228102. doi: 10.1103/PhysRevLett.100.228102. Epub 2008 Jun 3. Phys Rev Lett. 2008. PMID: 18643462
Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding.
Haliloglu T, Erman B. Haliloglu T, et al. Among authors: erman b. Phys Rev Lett. 2009 Feb 27;102(8):088103. doi: 10.1103/PhysRevLett.102.088103. Epub 2009 Feb 27. Phys Rev Lett. 2009. PMID: 19257794
Statistical thermodynamics of residue fluctuations in native proteins.
Yogurtcu ON, Gur M, Erman B. Yogurtcu ON, et al. Among authors: erman b. J Chem Phys. 2009 Mar 7;130(9):095103. doi: 10.1063/1.3078517. J Chem Phys. 2009. PMID: 19275429
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