Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

106 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?
Leblois R, Estoup A, Streiff R. Leblois R, et al. Mol Ecol. 2006 Oct;15(12):3601-15. doi: 10.1111/j.1365-294X.2006.03046.x. Mol Ecol. 2006. PMID: 17032260
Using a simulation-based approach, we investigated how comparative and single-point methods, traditionally used in a Wright-Fisher (WF) population context for detecting population size reduction, behave for IBD populations. ...Depending on the method used to detect …
Using a simulation-based approach, we investigated how comparative and single-point methods, traditionally used in a Wright-Fi …
DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data.
Cornuet JM, Pudlo P, Veyssier J, Dehne-Garcia A, Gautier M, Leblois R, Marin JM, Estoup A. Cornuet JM, et al. Bioinformatics. 2014 Apr 15;30(8):1187-1189. doi: 10.1093/bioinformatics/btt763. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389659
MOTIVATION: DIYABC is a software package for a comprehensive analysis of population history using approximate Bayesian computation on DNA polymorphism data. ...AVAILABILITY: Freely available with a detailed notice document and example projects to academic use …
MOTIVATION: DIYABC is a software package for a comprehensive analysis of population history using approximate Bayesian computa …
In defence of model-based inference in phylogeography.
Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, Cornuet JM, Huelsenbeck J, Foll M, Yang Z, Rousset F, Balding D, Excoffier L. Beaumont MA, et al. Mol Ecol. 2010 Feb;19(3):436-446. doi: 10.1111/j.1365-294X.2009.04515.x. Epub 2010 Jan 11. Mol Ecol. 2010. PMID: 29284924 Free PMC article.
We argue that ABC is a statistically valid approach, alongside other computational statistical techniques that have been successfully used to infer parameters and compare models in population genetics. ...We further show that the ages of clades are carelessly used to infer …
We argue that ABC is a statistically valid approach, alongside other computational statistical techniques that have been successfully …
Isolation and characterization of microsatellites in the harlequin ladybird, Harmonia axyridis (Coleoptera, Coccinellidae), and cross-species amplification within the family Coccinellidae.
Loiseau A, Malausa T, Lombaert E, Martin JF, Estoup A. Loiseau A, et al. Mol Ecol Resour. 2009 May;9(3):934-7. doi: 10.1111/j.1755-0998.2009.02517.x. Epub 2009 Jan 22. Mol Ecol Resour. 2009. PMID: 21564796
A total of 18 microsatellite DNA loci were isolated and characterized from the harlequin ladybird, Harmonia axyridis (Coleoptera: Coccinellidae). We optimized a multiplex panel consisting of two polymerase chain reactions, allowing the genotyping of all loci. The nu
A total of 18 microsatellite DNA loci were isolated and characterized from the harlequin ladybird, Harmonia axyridis (Coleoptera: Coc
Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus.
Estoup A, Baird SJ, Ray N, Currat M, Cornuet JM, Santos F, Beaumont MA, Excoffier L. Estoup A, et al. Mol Ecol Resour. 2010 Sep;10(5):886-901. doi: 10.1111/j.1755-0998.2010.02882.x. Epub 2010 Jun 2. Mol Ecol Resour. 2010. PMID: 21565099
We developed a spatially explicit model of a bioinvasion and used an approximate Bayesian computation (ABC) framework to make various inferences from a combination of genetic (microsatellite genotypes), historical (first observation dates) and geographical (s …
We developed a spatially explicit model of a bioinvasion and used an approximate Bayesian computation (ABC) framework to make …
Complementarity of statistical treatments to reconstruct worldwide routes of invasion: the case of the Asian ladybird Harmonia axyridis.
Lombaert E, Guillemaud T, Lundgren J, Koch R, Facon B, Grez A, Loomans A, Malausa T, Nedved O, Rhule E, Staverlokk A, Steenberg T, Estoup A. Lombaert E, et al. Mol Ecol. 2014 Dec;23(24):5979-97. doi: 10.1111/mec.12989. Epub 2014 Dec 11. Mol Ecol. 2014. PMID: 25369988
Approximate Bayesian computation (ABC) can help to overcome these problems, but such method requires a prior understanding of population structure over the study area, necessitating the use of alternative methods and an intense sampling design. ...Approaches involving inde …
Approximate Bayesian computation (ABC) can help to overcome these problems, but such method requires a prior understanding of populat …
Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.
Gautier M, Foucaud J, Gharbi K, Cézard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhué C, Estoup A. Gautier M, et al. Mol Ecol. 2013 Jul;22(14):3766-79. doi: 10.1111/mec.12360. Epub 2013 Jun 4. Mol Ecol. 2013. PMID: 23730833
We propose the intuitive notion of effective pool size to account for unequal pooling and derive a Bayesian hierarchical model to estimate this parameter directly from the data. ...NGS of DNA pools might not be optimal for all types of studies but provides a cost-ef …
We propose the intuitive notion of effective pool size to account for unequal pooling and derive a Bayesian hierarchical model to est …
Estimation of demo-genetic model probabilities with Approximate Bayesian Computation using linear discriminant analysis on summary statistics.
Estoup A, Lombaert E, Marin JM, Guillemaud T, Pudlo P, Robert CP, Cornuet JM. Estoup A, et al. Mol Ecol Resour. 2012 Sep;12(5):846-55. doi: 10.1111/j.1755-0998.2012.03153.x. Epub 2012 May 9. Mol Ecol Resour. 2012. PMID: 22571382
We here describe a methodological innovation to process efficient ABC scenario probability computation using linear discriminant analysis (LDA) on Ss before computing logistic regression. ...The faster probability computation that we observed (speed gain around a fa …
We here describe a methodological innovation to process efficient ABC scenario probability computation using linear discriminant anal …
Eight polymorphic microsatellite loci for the Australian plague locust, Chortoicetes terminifera.
Chapuis MP, Popple JA, Simpson SJ, Estoup A, Martin JF, Steinbauer M, McCulloch L, Sword GA. Chapuis MP, et al. Mol Ecol Resour. 2008 Nov;8(6):1414-6. doi: 10.1111/j.1755-0998.2008.02204.x. Epub 2008 Sep 15. Mol Ecol Resour. 2008. PMID: 21586062
IBDSim: a computer program to simulate genotypic data under isolation by distance.
Leblois R, Estoup A, Rousset F. Leblois R, et al. Mol Ecol Resour. 2009 Jan;9(1):107-9. doi: 10.1111/j.1755-0998.2008.02417.x. Epub 2008 Nov 10. Mol Ecol Resour. 2009. PMID: 21564573
IBDSim is a package for the simulation of genotypic data under isolation by distance. It is based on a backward 'generation by generation' coalescent algorithm allowing the consideration of various isolation by distance models with discrete subpopulations as well as …
IBDSim is a package for the simulation of genotypic data under isolation by distance. It is based on a backward 'generation by …
106 results
Jump to page
Feedback