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Proteomics FASTA archive and reference resource.
Falkner JA, Hill JA, Andrews PC. Falkner JA, et al. Proteomics. 2008 May;8(9):1756-7. doi: 10.1002/pmic.200701194. Proteomics. 2008. PMID: 18442177 Free article.
Exploring protein-ligand recognition with Binding MOAD.
Smith RD, Hu L, Falkner JA, Benson ML, Nerothin JP, Carlson HA. Smith RD, et al. J Mol Graph Model. 2006 May;24(6):414-25. doi: 10.1016/j.jmgm.2005.08.002. Epub 2005 Sep 15. J Mol Graph Model. 2006. PMID: 16168689
Validated MALDI-TOF/TOF mass spectra for protein standards.
Falkner JA, Kachman M, Veine DM, Walker A, Strahler JR, Andrews PC. Falkner JA, et al. J Am Soc Mass Spectrom. 2007 May;18(5):850-5. doi: 10.1016/j.jasms.2007.01.010. Epub 2007 Feb 27. J Am Soc Mass Spectrom. 2007. PMID: 17329120
A spectral clustering approach to MS/MS identification of post-translational modifications.
Falkner JA, Falkner JW, Yocum AK, Andrews PC. Falkner JA, et al. Among authors: falkner jw. J Proteome Res. 2008 Nov;7(11):4614-22. doi: 10.1021/pr800226w. Epub 2008 Sep 19. J Proteome Res. 2008. PMID: 18800783
ProteomeCommons.org JAF: reference information and tools for proteomics.
Falkner JA, Falkner JW, Andrews PC. Falkner JA, et al. Bioinformatics. 2006 Mar 1;22(5):632-3. doi: 10.1093/bioinformatics/btk015. Epub 2006 Jan 24. Bioinformatics. 2006. PMID: 16434446
ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.
Falkner JA, Falkner JW, Andrews PC. Falkner JA, et al. Bioinformatics. 2007 Jan 15;23(2):262-3. doi: 10.1093/bioinformatics/btl573. Epub 2006 Nov 22. Bioinformatics. 2007. PMID: 17121776
Rapid optimization of MRM-MS instrument parameters by subtle alteration of precursor and product m/z targets.
Sherwood CA, Eastham A, Lee LW, Risler J, Mirzaei H, Falkner JA, Martin DB. Sherwood CA, et al. Among authors: falkner ja. J Proteome Res. 2009 Jul;8(7):3746-51. doi: 10.1021/pr801122b. J Proteome Res. 2009. PMID: 19405522 Free PMC article.
Human Proteinpedia enables sharing of human protein data.
Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A. Mathivanan S, et al. Among authors: falkner j. Nat Biotechnol. 2008 Feb;26(2):164-7. doi: 10.1038/nbt0208-164. Nat Biotechnol. 2008. PMID: 18259167 Free article. No abstract available.
Touch and social support influence interpersonal synchrony and pain.
Reddan MC, Young H, Falkner J, López-Solà M, Wager TD. Reddan MC, et al. Among authors: falkner j. Soc Cogn Affect Neurosci. 2020 Apr 17:nsaa048. doi: 10.1093/scan/nsaa048. Online ahead of print. Soc Cogn Affect Neurosci. 2020. PMID: 32301998 Free article.
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