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Microbiology Meets Big Data: The Case of Gut Microbiota-Derived Trimethylamine.
Falony G, Vieira-Silva S, Raes J. Falony G, et al. Annu Rev Microbiol. 2015;69:305-21. doi: 10.1146/annurev-micro-091014-104422. Epub 2015 Aug 13. Annu Rev Microbiol. 2015. PMID: 26274026 Review.
Species-function relationships shape ecological properties of the human gut microbiome.
Vieira-Silva S, Falony G, Darzi Y, Lima-Mendez G, Garcia Yunta R, Okuda S, Vandeputte D, Valles-Colomer M, Hildebrand F, Chaffron S, Raes J. Vieira-Silva S, et al. Among authors: falony g. Nat Microbiol. 2016 Jun 13;1(8):16088. doi: 10.1038/nmicrobiol.2016.88. Nat Microbiol. 2016. PMID: 27573110
Richness and ecosystem development across faecal snapshots of the gut microbiota.
Falony G, Vieira-Silva S, Raes J. Falony G, et al. Nat Microbiol. 2018 May;3(5):526-528. doi: 10.1038/s41564-018-0143-5. Nat Microbiol. 2018. PMID: 29693658 No abstract available.
The neuroactive potential of the human gut microbiota in quality of life and depression.
Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira-Silva S, Raes J. Valles-Colomer M, et al. Among authors: falony g. Nat Microbiol. 2019 Apr;4(4):623-632. doi: 10.1038/s41564-018-0337-x. Epub 2019 Feb 4. Nat Microbiol. 2019. PMID: 30718848
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis.
Vieira-Silva S, Falony G, Belda E, Nielsen T, Aron-Wisnewsky J, Chakaroun R, Forslund SK, Assmann K, Valles-Colomer M, Nguyen TTD, Proost S, Prifti E, Tremaroli V, Pons N, Le Chatelier E, Andreelli F, Bastard JP, Coelho LP, Galleron N, Hansen TH, Hulot JS, Lewinter C, Pedersen HK, Quinquis B, Rouault C, Roume H, Salem JE, Søndertoft NB, Touch S; MetaCardis Consortium, Dumas ME, Ehrlich SD, Galan P, Gøtze JP, Hansen T, Holst JJ, Køber L, Letunic I, Nielsen J, Oppert JM, Stumvoll M, Vestergaard H, Zucker JD, Bork P, Pedersen O, Bäckhed F, Clément K, Raes J. Vieira-Silva S, et al. Among authors: falony g. Nature. 2020 May;581(7808):310-315. doi: 10.1038/s41586-020-2269-x. Epub 2020 May 6. Nature. 2020. PMID: 32433607
Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.
Hughes DA, Bacigalupe R, Wang J, Rühlemann MC, Tito RY, Falony G, Joossens M, Vieira-Silva S, Henckaerts L, Rymenans L, Verspecht C, Ring S, Franke A, Wade KH, Timpson NJ, Raes J. Hughes DA, et al. Among authors: falony g. Nat Microbiol. 2020 Sep;5(9):1079-1087. doi: 10.1038/s41564-020-0743-8. Epub 2020 Jun 22. Nat Microbiol. 2020. PMID: 32572223
Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology.
Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, Bastard JP, Forslund S, Le Chatelier E, Falony G, Pons N, Prifti E, Quinquis B, Roume H, Vieira-Silva S, Hansen TH, Pedersen HK, Lewinter C, Sønderskov NB; MetaCardis Consortium, Køber L, Vestergaard H, Hansen T, Zucker JD, Galan P, Dumas ME, Raes J, Oppert JM, Letunic I, Nielsen J, Bork P, Ehrlich SD, Stumvoll M, Pedersen O, Aron-Wisneswky J, Clément K, Bäckhed F. Molinaro A, et al. Among authors: falony g. Nat Commun. 2020 Nov 18;11(1):5881. doi: 10.1038/s41467-020-19589-w. Nat Commun. 2020. PMID: 33208748 Free PMC article.
Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates.
Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J. Vandeputte D, et al. Among authors: falony g. Gut. 2016 Jan;65(1):57-62. doi: 10.1136/gutjnl-2015-309618. Epub 2015 Jun 11. Gut. 2016. PMID: 26069274 Free PMC article.
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Pedersen HK, Arumugam M, Kristiansen K, Voigt AY, Vestergaard H, Hercog R, Costea PI, Kultima JR, Li J, Jørgensen T, Levenez F, Dore J; MetaHIT consortium, Nielsen HB, Brunak S, Raes J, Hansen T, Wang J, Ehrlich SD, Bork P, Pedersen O. Forslund K, et al. Among authors: falony g. Nature. 2015 Dec 10;528(7581):262-266. doi: 10.1038/nature15766. Epub 2015 Dec 2. Nature. 2015. PMID: 26633628 Free PMC article.
Cross-feeding between Bifidobacterium longum BB536 and acetate-converting, butyrate-producing colon bacteria during growth on oligofructose.
Falony G, Vlachou A, Verbrugghe K, De Vuyst L. Falony G, et al. Appl Environ Microbiol. 2006 Dec;72(12):7835-41. doi: 10.1128/AEM.01296-06. Epub 2006 Oct 20. Appl Environ Microbiol. 2006. PMID: 17056678 Free PMC article.
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