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Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation.
Vilarrasa-Blasi R, Soler-Vila P, Verdaguer-Dot N, Russiñol N, Di Stefano M, Chapaprieta V, Clot G, Farabella I, Cuscó P, Kulis M, Agirre X, Prosper F, Beekman R, Beà S, Colomer D, Stunnenberg HG, Gut I, Campo E, Marti-Renom MA, Martin-Subero JI. Vilarrasa-Blasi R, et al. Among authors: farabella i. Nat Commun. 2021 Jan 28;12(1):651. doi: 10.1038/s41467-020-20849-y. Nat Commun. 2021. PMID: 33510161 Free PMC article.
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT. Nir G, et al. Among authors: farabella i. PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec. PLoS Genet. 2018. PMID: 30586358 Free PMC article.
Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes.
Miguel-Escalada I, Bonàs-Guarch S, Cebola I, Ponsa-Cobas J, Mendieta-Esteban J, Atla G, Javierre BM, Rolando DMY, Farabella I, Morgan CC, García-Hurtado J, Beucher A, Morán I, Pasquali L, Ramos-Rodríguez M, Appel EVR, Linneberg A, Gjesing AP, Witte DR, Pedersen O, Grarup N, Ravassard P, Torrents D, Mercader JM, Piemonti L, Berney T, de Koning EJP, Kerr-Conte J, Pattou F, Fedko IO, Groop L, Prokopenko I, Hansen T, Marti-Renom MA, Fraser P, Ferrer J. Miguel-Escalada I, et al. Among authors: farabella i. Nat Genet. 2019 Jul;51(7):1137-1148. doi: 10.1038/s41588-019-0457-0. Epub 2019 Jun 28. Nat Genet. 2019. PMID: 31253982 Free PMC article.
Hierarchical chromatin organization detected by TADpole.
Soler-Vila P, Cuscó P, Farabella I, Di Stefano M, Marti-Renom MA. Soler-Vila P, et al. Among authors: farabella i. Nucleic Acids Res. 2020 Apr 17;48(7):e39. doi: 10.1093/nar/gkaa087. Nucleic Acids Res. 2020. PMID: 32083658 Free PMC article.
TADs without borders.
Farabella I, Marti-Renom MA. Farabella I, et al. Nat Genet. 2020 Aug;52(8):752-753. doi: 10.1038/s41588-020-0670-x. Nat Genet. 2020. PMID: 32747821 No abstract available.
3D reconstruction of genomic regions from sparse interaction data.
Mendieta-Esteban J, Di Stefano M, Castillo D, Farabella I, Marti-Renom MA. Mendieta-Esteban J, et al. Among authors: farabella i. NAR Genom Bioinform. 2021 Mar 22;3(1):lqab017. doi: 10.1093/nargab/lqab017. eCollection 2021 Mar. NAR Genom Bioinform. 2021. PMID: 33778492 Free PMC article.
Three-dimensional genome organization via triplex-forming RNAs.
Farabella I, Di Stefano M, Soler-Vila P, Marti-Marimon M, Marti-Renom MA. Farabella I, et al. Nat Struct Mol Biol. 2021 Nov;28(11):945-954. doi: 10.1038/s41594-021-00678-3. Epub 2021 Nov 10. Nat Struct Mol Biol. 2021. PMID: 34759378
21 results