Farahani H - Search Results

1

Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden.

Anglesio MS, Bashashati A, Wang YK, Senz J, Ha G, Yang W, Aniba MR, Prentice LM, Farahani H, Li Chang H, Karnezis AN, Marra MA, Yong PJ, Hirst M, Gilks B, Shah SP, Huntsman DG. Anglesio MS, et al. Among authors: farahani h. J Pathol. 2015 Jun;236(2):201-9. doi: 10.1002/path.4516. Epub 2015 Mar 23. J Pathol. 2015. PMID: 25692284 Free PMC article.

2

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

Eirew P, Steif A, Khattra J, Ha G, Yap D, Farahani H, Gelmon K, Chia S, Mar C, Wan A, Laks E, Biele J, Shumansky K, Rosner J, McPherson A, Nielsen C, Roth AJ, Lefebvre C, Bashashati A, de Souza C, Siu C, Aniba R, Brimhall J, Oloumi A, Osako T, Bruna A, Sandoval JL, Algara T, Greenwood W, Leung K, Cheng H, Xue H, Wang Y, Lin D, Mungall AJ, Moore R, Zhao Y, Lorette J, Nguyen L, Huntsman D, Eaves CJ, Hansen C, Marra MA, Caldas C, Shah SP, Aparicio S. Eirew P, et al. Among authors: farahani h. Nature. 2015 Feb 19;518(7539):422-6. doi: 10.1038/nature13952. Epub 2014 Nov 26. Nature. 2015. PMID: 25470049 Free PMC article.

3

Synthesis of diagnostic quality cancer pathology images by generative adversarial networks.

Levine AB, Peng J, Farnell D, Nursey M, Wang Y, Naso JR, Ren H, Farahani H, Chen C, Chiu D, Talhouk A, Sheffield B, Riazy M, Ip PP, Parra-Herran C, Mills A, Singh N, Tessier-Cloutier B, Salisbury T, Lee J, Salcudean T, Jones SJ, Huntsman DG, Gilks CB, Yip S, Bashashati A. Levine AB, et al. Among authors: farahani h. J Pathol. 2020 Oct;252(2):178-188. doi: 10.1002/path.5509. Epub 2020 Sep 8. J Pathol. 2020. PMID: 32686118

4

The utility of color normalization for AI-based diagnosis of hematoxylin and eosin-stained pathology images.

Boschman J, Farahani H, Darbandsari A, Ahmadvand P, Van Spankeren A, Farnell D, Levine AB, Naso JR, Churg A, Jones SJ, Yip S, Köbel M, Huntsman DG, Gilks CB, Bashashati A. Boschman J, et al. Among authors: farahani h. J Pathol. 2022 Jan;256(1):15-24. doi: 10.1002/path.5797. Epub 2021 Nov 6. J Pathol. 2022. PMID: 34543435

5

Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images.

Farahani H, Boschman J, Farnell D, Darbandsari A, Zhang A, Ahmadvand P, Jones SJM, Huntsman D, Köbel M, Gilks CB, Singh N, Bashashati A. Farahani H, et al. Mod Pathol. 2022 Dec;35(12):1983-1990. doi: 10.1038/s41379-022-01146-z. Epub 2022 Sep 5. Mod Pathol. 2022. PMID: 36065012 Free article.

6

Deep-learning based classification distinguishes sarcomatoid malignant mesotheliomas from benign spindle cell mesothelial proliferations.

Naso JR, Levine AB, Farahani H, Chirieac LR, Dacic S, Wright JL, Lai C, Yang HM, Jones SJM, Bashashati A, Yip S, Churg A. Naso JR, et al. Among authors: farahani h. Mod Pathol. 2021 Nov;34(11):2028-2035. doi: 10.1038/s41379-021-00850-6. Epub 2021 Jun 10. Mod Pathol. 2021. PMID: 34112957 Free article.

7

E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.

Smith MA, Nielsen CB, Chan FC, McPherson A, Roth A, Farahani H, Machev D, Steif A, Shah SP. Smith MA, et al. Among authors: farahani h. Nat Methods. 2017 May 30;14(6):549-550. doi: 10.1038/nmeth.4303. Nat Methods. 2017. PMID: 28557980 No abstract available.

8

Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer.

Murtaza M, Dawson SJ, Pogrebniak K, Rueda OM, Provenzano E, Grant J, Chin SF, Tsui DWY, Marass F, Gale D, Ali HR, Shah P, Contente-Cuomo T, Farahani H, Shumansky K, Kingsbury Z, Humphray S, Bentley D, Shah SP, Wallis M, Rosenfeld N, Caldas C. Murtaza M, et al. Among authors: farahani h. Nat Commun. 2015 Nov 4;6:8760. doi: 10.1038/ncomms9760. Nat Commun. 2015. PMID: 26530965 Free PMC article.

9

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers.

Campbell KR, Steif A, Laks E, Zahn H, Lai D, McPherson A, Farahani H, Kabeer F, O'Flanagan C, Biele J, Brimhall J, Wang B, Walters P; IMAXT Consortium; Bouchard-Côté A, Aparicio S, Shah SP. Campbell KR, et al. Among authors: farahani h. Genome Biol. 2019 Mar 12;20(1):54. doi: 10.1186/s13059-019-1645-z. Genome Biol. 2019. PMID: 30866997 Free PMC article.

10

Engineered in-vitro cell line mixtures and robust evaluation of computational methods for clonal decomposition and longitudinal dynamics in cancer.

Farahani H, de Souza CPE, Billings R, Yap D, Shumansky K, Wan A, Lai D, Mes-Masson AM, Aparicio S, P Shah S. Farahani H, et al. Sci Rep. 2017 Oct 18;7(1):13467. doi: 10.1038/s41598-017-13338-8. Sci Rep. 2017. PMID: 29044127 Free PMC article.

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