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A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research.
Meeker D, Jiang X, Matheny ME, Farcas C, D'Arcy M, Pearlman L, Nookala L, Day ME, Kim KK, Kim H, Boxwala A, El-Kareh R, Kuo GM, Resnic FS, Kesselman C, Ohno-Machado L. Meeker D, et al. Among authors: farcas c. J Am Med Inform Assoc. 2015 Nov;22(6):1187-95. doi: 10.1093/jamia/ocv017. Epub 2015 Jul 3. J Am Med Inform Assoc. 2015. PMID: 26142423 Free PMC article.
iDASH: integrating data for analysis, anonymization, and sharing.
Ohno-Machado L, Bafna V, Boxwala AA, Chapman BE, Chapman WW, Chaudhuri K, Day ME, Farcas C, Heintzman ND, Jiang X, Kim H, Kim J, Matheny ME, Resnic FS, Vinterbo SA; iDASH team. Ohno-Machado L, et al. Among authors: farcas c. J Am Med Inform Assoc. 2012 Mar-Apr;19(2):196-201. doi: 10.1136/amiajnl-2011-000538. Epub 2011 Nov 10. J Am Med Inform Assoc. 2012. PMID: 22081224 Free PMC article.
pSCANNER: patient-centered Scalable National Network for Effectiveness Research.
Ohno-Machado L, Agha Z, Bell DS, Dahm L, Day ME, Doctor JN, Gabriel D, Kahlon MK, Kim KK, Hogarth M, Matheny ME, Meeker D, Nebeker JR; pSCANNER team. Ohno-Machado L, et al. J Am Med Inform Assoc. 2014 Jul-Aug;21(4):621-6. doi: 10.1136/amiajnl-2014-002751. Epub 2014 Apr 29. J Am Med Inform Assoc. 2014. PMID: 24780722 Free PMC article.
iCONCUR: informed consent for clinical data and bio-sample use for research.
Kim H, Bell E, Kim J, Sitapati A, Ramsdell J, Farcas C, Friedman D, Feupe SF, Ohno-Machado L. Kim H, et al. Among authors: farcas c. J Am Med Inform Assoc. 2017 Mar 1;24(2):380-387. doi: 10.1093/jamia/ocw115. J Am Med Inform Assoc. 2017. PMID: 27589942 Free PMC article.
Ensembles of NLP Tools for Data Element Extraction from Clinical Notes.
Kuo TT, Rao P, Maehara C, Doan S, Chaparro JD, Day ME, Farcas C, Ohno-Machado L, Hsu CN. Kuo TT, et al. Among authors: farcas c. AMIA Annu Symp Proc. 2017 Feb 10;2016:1880-1889. eCollection 2016. AMIA Annu Symp Proc. 2017. PMID: 28269947 Free PMC article.
DataMed - an open source discovery index for finding biomedical datasets.
Chen X, Gururaj AE, Ozyurt B, Liu R, Soysal E, Cohen T, Tiryaki F, Li Y, Zong N, Jiang M, Rogith D, Salimi M, Kim HE, Rocca-Serra P, Gonzalez-Beltran A, Farcas C, Johnson T, Margolis R, Alter G, Sansone SA, Fore IM, Ohno-Machado L, Grethe JS, Xu H. Chen X, et al. Among authors: farcas c. J Am Med Inform Assoc. 2018 Mar 1;25(3):300-308. doi: 10.1093/jamia/ocx121. J Am Med Inform Assoc. 2018. PMID: 29346583 Free PMC article.
Butler enables rapid cloud-based analysis of thousands of human genomes.
Yakneen S, Waszak SM; PCAWG Technical Working Group; Gertz M, Korbel JO; PCAWG Consortium. Yakneen S, et al. Nat Biotechnol. 2020 Mar;38(3):288-292. doi: 10.1038/s41587-019-0360-3. Epub 2020 Feb 5. Nat Biotechnol. 2020. PMID: 32024987 Free PMC article.
76 results