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GroEL and the maintenance of bacterial endosymbiosis.
Fares MA, Moya A, Barrio E. Fares MA, et al. Trends Genet. 2004 Sep;20(9):413-6. doi: 10.1016/j.tig.2004.07.001. Trends Genet. 2004. PMID: 15313549 Review.
The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection.
Fares MA, Barrio E, Sabater-Muñoz B, Moya A. Fares MA, et al. Mol Biol Evol. 2002 Jul;19(7):1162-70. doi: 10.1093/oxfordjournals.molbev.a004174. Mol Biol Evol. 2002. PMID: 12082135
Coevolution analyses illuminate the dependencies between amino acid sites in the chaperonin system GroES-L.
Ruiz-González MX, Fares MA. Ruiz-González MX, et al. Among authors: fares ma. BMC Evol Biol. 2013 Jul 22;13:156. doi: 10.1186/1471-2148-13-156. BMC Evol Biol. 2013. PMID: 23875653 Free PMC article.
Unravelling selection shifts among foot-and-mouth disease virus (FMDV) serotypes.
Tully DC, Fares MA. Tully DC, et al. Among authors: fares ma. Evol Bioinform Online. 2007 Feb 11;2:211-25. Evol Bioinform Online. 2007. PMID: 19455214 Free PMC article.
Structural calibration of the rates of amino acid evolution in a search for Darwin in drifting biological systems.
Toft C, Fares MA. Toft C, et al. Among authors: fares ma. Mol Biol Evol. 2010 Oct;27(10):2375-85. doi: 10.1093/molbev/msq123. Epub 2010 May 13. Mol Biol Evol. 2010. PMID: 20466746
GRAST: a new way of genome reduction analysis using comparative genomics.
Toft C, Fares MA. Toft C, et al. Among authors: fares ma. Bioinformatics. 2006 Jul 1;22(13):1551-61. doi: 10.1093/bioinformatics/btl139. Epub 2006 Apr 6. Bioinformatics. 2006. PMID: 16601001
A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.
Fares MA, Travers SA. Fares MA, et al. Genetics. 2006 May;173(1):9-23. doi: 10.1534/genetics.105.053249. Epub 2006 Mar 17. Genetics. 2006. PMID: 16547113 Free PMC article.
Fitness Trade-Offs Determine the Role of the Molecular Chaperonin GroEL in Buffering Mutations.
Sabater-Muñoz B, Prats-Escriche M, Montagud-Martínez R, López-Cerdán A, Toft C, Aguilar-Rodríguez J, Wagner A, Fares MA. Sabater-Muñoz B, et al. Among authors: fares ma. Mol Biol Evol. 2015 Oct;32(10):2681-93. doi: 10.1093/molbev/msv144. Epub 2015 Jun 27. Mol Biol Evol. 2015. PMID: 26116858 Free PMC article.
Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations.
Caffrey BE, Williams TA, Jiang X, Toft C, Hokamp K, Fares MA. Caffrey BE, et al. Among authors: fares ma. PLoS One. 2012;7(4):e35659. doi: 10.1371/journal.pone.0035659. Epub 2012 Apr 26. PLoS One. 2012. PMID: 22563391 Free PMC article.
The effect of chaperonin buffering on protein evolution.
Williams TA, Fares MA. Williams TA, et al. Among authors: fares ma. Genome Biol Evol. 2010;2:609-19. doi: 10.1093/gbe/evq045. Epub 2010 Jul 21. Genome Biol Evol. 2010. PMID: 20660109 Free PMC article.
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