Farmer A - Search Results

1

A comparative study of ChIP-seq sequencing library preparation methods.

Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD. Sundaram AY, et al. Among authors: farmer a. BMC Genomics. 2016 Oct 21;17(1):816. doi: 10.1186/s12864-016-3135-y. BMC Genomics. 2016. PMID: 27769162 Free PMC article.

2

Preparation of Low-Input and Ligation-Free ChIP-seq Libraries Using Template-Switching Technology.

Bolduc N, Lehman AP, Farmer A. Bolduc N, et al. Among authors: farmer a. Curr Protoc Mol Biol. 2016 Oct 10;116:7.28.1-7.28.26. doi: 10.1002/cpmb.24. Curr Protoc Mol Biol. 2016. PMID: 27723085

3

Strand-Specific Transcriptome Sequencing Using SMART Technology.

Bostick M, Bolduc N, Lehman A, Farmer A. Bostick M, et al. Among authors: farmer a. Curr Protoc Mol Biol. 2016 Oct 10;116:4.27.1-4.27.18. doi: 10.1002/cpmb.22. Curr Protoc Mol Biol. 2016. PMID: 27723087

4

Systematic assessment of commercially available low-input miRNA library preparation kits.

Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD. Heinicke F, et al. Among authors: farmer a. RNA Biol. 2020 Jan;17(1):75-86. doi: 10.1080/15476286.2019.1667741. Epub 2019 Sep 27. RNA Biol. 2020. PMID: 31559901 Free PMC article.

5

Benchmarking Single-Cell mRNA-Sequencing Technologies Uncovers Differences in Sensitivity and Reproducibility in Cell Types With Low RNA Content.

Holcomb I, Bansal N, Duong T, Babb P, Laliberte J, Swaminathan K, Xu HH, Melloy LA, Hildebrand J, Farmer A. Holcomb I, et al. Among authors: farmer a. J Biomol Tech. 2021 Dec 15;32(4):3fc1f5fe.dbeabb2a. doi: 10.7171/3fc1f5fe.dbeabb2a. J Biomol Tech. 2021. PMID: 35837268 Free PMC article.

6

SARS-CoV-2 can infect human embryos.

Montano M, Victor AR, Griffin DK, Duong T, Bolduc N, Farmer A, Garg V, Hadjantonakis AK, Coates A, Barnes FL, Zouves CG, Greene WC, Viotti M. Montano M, et al. Among authors: farmer a. Sci Rep. 2022 Sep 14;12(1):15451. doi: 10.1038/s41598-022-18906-1. Sci Rep. 2022. PMID: 36104397 Free PMC article.

7

Transcriptome Analysis at the Single-Cell Level Using SMART Technology.

Fish RN, Bostick M, Lehman A, Farmer A. Fish RN, et al. Among authors: farmer a. Curr Protoc Mol Biol. 2016 Oct 10;116:4.26.1-4.26.24. doi: 10.1002/cpmb.23. Curr Protoc Mol Biol. 2016. PMID: 27723086

8

A multi-center cross-platform single-cell RNA sequencing reference dataset.

Chen X, Yang Z, Chen W, Zhao Y, Farmer A, Tran B, Furtak V, Moos M Jr, Xiao W, Wang C. Chen X, et al. Among authors: farmer a. Sci Data. 2021 Feb 2;8(1):39. doi: 10.1038/s41597-021-00809-x. Sci Data. 2021. PMID: 33531477 Free PMC article.

9

High-throughput chromatin accessibility profiling at single-cell resolution.

Mezger A, Klemm S, Mann I, Brower K, Mir A, Bostick M, Farmer A, Fordyce P, Linnarsson S, Greenleaf W. Mezger A, et al. Among authors: farmer a. Nat Commun. 2018 Sep 7;9(1):3647. doi: 10.1038/s41467-018-05887-x. Nat Commun. 2018. PMID: 30194434 Free PMC article.

10

A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples.

Chen W, Zhao Y, Chen X, Yang Z, Xu X, Bi Y, Chen V, Li J, Choi H, Ernest B, Tran B, Mehta M, Kumar P, Farmer A, Mir A, Mehra UA, Li JL, Moos M Jr, Xiao W, Wang C. Chen W, et al. Among authors: farmer a. Nat Biotechnol. 2021 Sep;39(9):1103-1114. doi: 10.1038/s41587-020-00748-9. Epub 2020 Dec 21. Nat Biotechnol. 2021. PMID: 33349700

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