Farnham PJ - Search Results

1

Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy.

Fujiwara T, O'Geen H, Keles S, Blahnik K, Linnemann AK, Kang YA, Choi K, Farnham PJ, Bresnick EH. Fujiwara T, et al. Among authors: farnham pj. Mol Cell. 2009 Nov 25;36(4):667-81. doi: 10.1016/j.molcel.2009.11.001. Mol Cell. 2009. PMID: 19941826 Free PMC article.

2

Genetic framework for GATA factor function in vascular biology.

Linnemann AK, O'Geen H, Keles S, Farnham PJ, Bresnick EH. Linnemann AK, et al. Among authors: farnham pj. Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13641-6. doi: 10.1073/pnas.1108440108. Epub 2011 Aug 1. Proc Natl Acad Sci U S A. 2011. PMID: 21808000 Free PMC article.

3

Autophagy driven by a master regulator of hematopoiesis.

Kang YA, Sanalkumar R, O'Geen H, Linnemann AK, Chang CJ, Bouhassira EE, Farnham PJ, Keles S, Bresnick EH. Kang YA, et al. Among authors: farnham pj. Mol Cell Biol. 2012 Jan;32(1):226-39. doi: 10.1128/MCB.06166-11. Epub 2011 Oct 24. Mol Cell Biol. 2012. PMID: 22025678 Free PMC article.

4

Using ChIP-seq technology to identify targets of zinc finger transcription factors.

O'Geen H, Frietze S, Farnham PJ. O'Geen H, et al. Among authors: farnham pj. Methods Mol Biol. 2010;649:437-55. doi: 10.1007/978-1-60761-753-2_27. Methods Mol Biol. 2010. PMID: 20680851 Free PMC article.

5

Using ChIP-seq technology to generate high-resolution profiles of histone modifications.

O'Geen H, Echipare L, Farnham PJ. O'Geen H, et al. Among authors: farnham pj. Methods Mol Biol. 2011;791:265-86. doi: 10.1007/978-1-61779-316-5_20. Methods Mol Biol. 2011. PMID: 21913086 Free PMC article.

6

Identification of genes directly regulated by the oncogene ZNF217 using chromatin immunoprecipitation (ChIP)-chip assays.

Krig SR, Jin VX, Bieda MC, O'Geen H, Yaswen P, Green R, Farnham PJ. Krig SR, et al. Among authors: farnham pj. J Biol Chem. 2007 Mar 30;282(13):9703-9712. doi: 10.1074/jbc.M611752200. Epub 2007 Jan 26. J Biol Chem. 2007. PMID: 17259635 Free PMC article.

7

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.

Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX. Lan X, et al. Among authors: farnham pj. Nucleic Acids Res. 2012 Sep;40(16):7690-704. doi: 10.1093/nar/gks501. Epub 2012 Jun 6. Nucleic Acids Res. 2012. PMID: 22675074 Free PMC article.

8

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes.

Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ. Frietze S, et al. Among authors: farnham pj. PLoS One. 2010 Dec 8;5(12):e15082. doi: 10.1371/journal.pone.0015082. PLoS One. 2010. PMID: 21170338 Free PMC article.

9

Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with ERalpha.

Frietze S, O'Geen H, Littlepage LE, Simion C, Sweeney CA, Farnham PJ, Krig SR. Frietze S, et al. Among authors: farnham pj. BMC Genomics. 2014 Jun 24;15(1):520. doi: 10.1186/1471-2164-15-520. BMC Genomics. 2014. PMID: 24962896 Free PMC article.

10

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Blahnik KR, Dou L, O'Geen H, McPhillips T, Xu X, Cao AR, Iyengar S, Nicolet CM, Ludäscher B, Korf I, Farnham PJ. Blahnik KR, et al. Among authors: farnham pj. Nucleic Acids Res. 2010 Jan;38(3):e13. doi: 10.1093/nar/gkp1012. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906703 Free PMC article.

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