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A group II intron inserted into a bacterial heat-shock operon shows autocatalytic activity and unusual thermostability.
Adamidi C, Fedorova O, Pyle AM. Adamidi C, et al. Among authors: fedorova o. Biochemistry. 2003 Apr 1;42(12):3409-18. doi: 10.1021/bi027330b. Biochemistry. 2003. PMID: 12653544
Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli.
Ishchenko AA, Vasilenko NL, Sinitsina OI, Yamkovoy VI, Fedorova OS, Douglas KT, Nevinsky GA. Ishchenko AA, et al. Biochemistry. 2002 Jun 18;41(24):7540-8. doi: 10.1021/bi0121297. Biochemistry. 2002. PMID: 12056884
Stopped-flow kinetic studies of the interaction between Escherichia coli Fpg protein and DNA substrates.
Fedorova OS, Nevinsky GA, Koval VV, Ishchenko AA, Vasilenko NL, Douglas KT. Fedorova OS, et al. Biochemistry. 2002 Feb 5;41(5):1520-8. doi: 10.1021/bi011524u. Biochemistry. 2002. PMID: 11814345
A chemogenetic approach to study the structural basis of protein-facilitated RNA folding.
Fedorova O. Fedorova O. Methods Mol Biol. 2014;1086:177-91. doi: 10.1007/978-1-62703-667-2_10. Methods Mol Biol. 2014. PMID: 24136604
The brace for a growing scaffold: Mss116 protein promotes RNA folding by stabilizing an early assembly intermediate.
Fedorova O, Pyle AM. Fedorova O, et al. J Mol Biol. 2012 Sep 21;422(3):347-65. doi: 10.1016/j.jmb.2012.05.037. Epub 2012 Jun 13. J Mol Biol. 2012. PMID: 22705286 Free PMC article.
A conserved element that stabilizes the group II intron active site.
Fedorova O, Pyle AM. Fedorova O, et al. RNA. 2008 Jun;14(6):1048-56. doi: 10.1261/rna.942308. Epub 2008 Apr 25. RNA. 2008. PMID: 18441048 Free PMC article.
Tertiary architecture of the Oceanobacillus iheyensis group II intron.
Toor N, Keating KS, Fedorova O, Rajashankar K, Wang J, Pyle AM. Toor N, et al. Among authors: fedorova o. RNA. 2010 Jan;16(1):57-69. doi: 10.1261/rna.1844010. Epub 2009 Dec 1. RNA. 2010. PMID: 19952115 Free PMC article.
Small molecules that target group II introns are potent antifungal agents.
Fedorova O, Jagdmann GE Jr, Adams RL, Yuan L, Van Zandt MC, Pyle AM. Fedorova O, et al. Nat Chem Biol. 2018 Dec;14(12):1073-1078. doi: 10.1038/s41589-018-0142-0. Epub 2018 Oct 15. Nat Chem Biol. 2018. PMID: 30323219 Free PMC article.
In vitro characterization of the splicing efficiency and fidelity of the RmInt1 group II intron as a means of controlling the dispersion of its host mobile element.
Chillón I, Molina-Sánchez MD, Fedorova O, García-Rodríguez FM, Martínez-Abarca F, Toro N. Chillón I, et al. Among authors: fedorova o. RNA. 2014 Dec;20(12):2000-10. doi: 10.1261/rna.047407.114. Epub 2014 Oct 21. RNA. 2014. PMID: 25336586 Free PMC article.
Kinetic characterization of group II intron folding and splicing.
Fedorova O. Fedorova O. Methods Mol Biol. 2012;848:91-111. doi: 10.1007/978-1-61779-545-9_7. Methods Mol Biol. 2012. PMID: 22315065
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