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Sequence type analysis and recombinational tests (START).
Jolley KA, Feil EJ, Chan MS, Maiden MC. Jolley KA, et al. Bioinformatics. 2001 Dec;17(12):1230-1. doi: 10.1093/bioinformatics/17.12.1230. Bioinformatics. 2001. PMID: 11751234
Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms.
Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, Zhang Q, Zhou J, Zurth K, Caugant DA, Feavers IM, Achtman M, Spratt BG. Maiden MC, et al. Proc Natl Acad Sci U S A. 1998 Mar 17;95(6):3140-5. doi: 10.1073/pnas.95.6.3140. Proc Natl Acad Sci U S A. 1998. PMID: 9501229 Free PMC article.
Databases and software for the comparison of prokaryotic genomes.
Field D, Feil EJ, Wilson GA. Field D, et al. Microbiology. 2005 Jul;151(Pt 7):2125-2132. doi: 10.1099/mic.0.28006-0. Microbiology. 2005. PMID: 16000703 Review.
Multilocus sequence typing--what is resolved?
Cooper JE, Feil EJ. Cooper JE, et al. Trends Microbiol. 2004 Aug;12(8):373-7. doi: 10.1016/j.tim.2004.06.003. Trends Microbiol. 2004. PMID: 15276613
Population structure and evolutionary dynamics of pathogenic bacteria.
Smith JM, Feil EJ, Smith NH. Smith JM, et al. Bioessays. 2000 Dec;22(12):1115-22. doi: 10.1002/1521-1878(200012)22:12<1115::AID-BIES9>3.0.CO;2-R. Bioessays. 2000. PMID: 11084627 Review.
Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae.
Feil EJ, Enright MC, Spratt BG. Feil EJ, et al. Res Microbiol. 2000 Jul-Aug;151(6):465-9. doi: 10.1016/s0923-2508(00)00168-6. Res Microbiol. 2000. PMID: 10961460 Review.
Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences.
Feil EJ, Holmes EC, Bessen DE, Chan MS, Day NP, Enright MC, Goldstein R, Hood DW, Kalia A, Moore CE, Zhou J, Spratt BG. Feil EJ, et al. Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):182-7. doi: 10.1073/pnas.98.1.182. Proc Natl Acad Sci U S A. 2001. PMID: 11136255 Free PMC article.
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