Fernandez-Fuentes N - Search Results

1

Classification of common functional loops of kinase super-families.

Fernandez-Fuentes N, Hermoso A, Espadaler J, Querol E, Aviles FX, Oliva B. Fernandez-Fuentes N, et al. Proteins. 2004 Aug 15;56(3):539-55. doi: 10.1002/prot.20136. Proteins. 2004. PMID: 15229886

2

ArchDB: automated protein loop classification as a tool for structural genomics.

Espadaler J, Fernandez-Fuentes N, Hermoso A, Querol E, Aviles FX, Sternberg MJ, Oliva B. Espadaler J, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D185-8. doi: 10.1093/nar/gkh002. Nucleic Acids Res. 2004. PMID: 14681390 Free PMC article.

3

Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.

Fernandez-Fuentes N, Querol E, Aviles FX, Sternberg MJ, Oliva B. Fernandez-Fuentes N, et al. Proteins. 2005 Sep 1;60(4):746-57. doi: 10.1002/prot.20516. Proteins. 2005. PMID: 16021623

4

Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB).

Hermoso A, Espadaler J, Enrique Querol E, Aviles FX, Sternberg MJ, Oliva B, Fernandez-Fuentes N. Hermoso A, et al. Bioinform Biol Insights. 2009 Nov 24;1:77-90. Bioinform Biol Insights. 2009. PMID: 20066127 Free PMC article.

5

A supersecondary structure library and search algorithm for modeling loops in protein structures.

Fernandez-Fuentes N, Oliva B, Fiser A. Fernandez-Fuentes N, et al. Nucleic Acids Res. 2006 Apr 14;34(7):2085-97. doi: 10.1093/nar/gkl156. Print 2006. Nucleic Acids Res. 2006. PMID: 16617149 Free PMC article.

6

CAPS-DB: a structural classification of helix-capping motifs.

Segura J, Oliva B, Fernandez-Fuentes N. Segura J, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D479-85. doi: 10.1093/nar/gkr879. Epub 2011 Oct 22. Nucleic Acids Res. 2012. PMID: 22021380 Free PMC article.

7

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design.

Bonet J, Segura J, Planas-Iglesias J, Oliva B, Fernandez-Fuentes N. Bonet J, et al. Bioinformatics. 2014 Jul 1;30(13):1935-6. doi: 10.1093/bioinformatics/btu129. Epub 2014 Mar 6. Bioinformatics. 2014. PMID: 24603983

8

Insight into the machinery that oils chromatin dynamics.

Wright RH, Fernandez-Fuentes N, Oliva B, Beato M. Wright RH, et al. Nucleus. 2016 Nov;7(6):532-539. doi: 10.1080/19491034.2016.1255392. Epub 2016 Nov 28. Nucleus. 2016. PMID: 27893319 Free PMC article. Review.

9

ArchDB 2014: structural classification of loops in proteins.

Bonet J, Planas-Iglesias J, Garcia-Garcia J, Marín-López MA, Fernandez-Fuentes N, Oliva B. Bonet J, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D315-9. doi: 10.1093/nar/gkt1189. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24265221 Free PMC article.

10

Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription.

Sharma P, Lioutas A, Fernandez-Fuentes N, Quilez J, Carbonell-Caballero J, Wright RHG, Di Vona C, Le Dily F, Schüller R, Eick D, Oliva B, Beato M. Sharma P, et al. Mol Cell. 2019 Jan 3;73(1):84-96.e7. doi: 10.1016/j.molcel.2018.10.016. Epub 2018 Nov 21. Mol Cell. 2019. PMID: 30472187 Free article.

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