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Applications of ultra-high-throughput sequencing.
Fox S, Filichkin S, Mockler TC. Fox S, et al. Methods Mol Biol. 2009;553:79-108. doi: 10.1007/978-1-60327-563-7_5. Methods Mol Biol. 2009. PMID: 19588102 Review.
The genome of black raspberry (Rubus occidentalis).
VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC. VanBuren R, et al. Among authors: filichkin sa. Plant J. 2016 Sep;87(6):535-47. doi: 10.1111/tpj.13215. Epub 2016 Jul 20. Plant J. 2016. PMID: 27228578 Free article.
Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.
Megraw M, Cumbie JS, Ivanchenko MG, Filichkin SA. Megraw M, et al. Among authors: filichkin sa. Plant Cell. 2016 Feb;28(2):286-303. doi: 10.1105/tpc.15.00852. Epub 2016 Feb 11. Plant Cell. 2016. PMID: 26869700 Free PMC article. Review.
Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana.
Cumbie JS, Filichkin SA, Megraw M. Cumbie JS, et al. Among authors: filichkin sa. Plant Methods. 2015 Sep 4;11:42. doi: 10.1186/s13007-015-0087-1. eCollection 2015. Plant Methods. 2015. PMID: 26339280 Free PMC article.
Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.
Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. Filichkin SA, et al. PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9. PLoS One. 2011. PMID: 21694767 Free PMC article.
Expression, splicing, and evolution of the myosin gene family in plants.
Peremyslov VV, Mockler TC, Filichkin SA, Fox SE, Jaiswal P, Makarova KS, Koonin EV, Dolja VV. Peremyslov VV, et al. Plant Physiol. 2011 Mar;155(3):1191-204. doi: 10.1104/pp.110.170720. Epub 2011 Jan 13. Plant Physiol. 2011. PMID: 21233331 Free PMC article.
Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Filichkin SA, et al. Genome Res. 2010 Jan;20(1):45-58. doi: 10.1101/gr.093302.109. Epub 2009 Oct 26. Genome Res. 2010. PMID: 19858364 Free PMC article.
Cis-regulatory elements in plant cell signaling.
Priest HD, Filichkin SA, Mockler TC. Priest HD, et al. Curr Opin Plant Biol. 2009 Oct;12(5):643-9. doi: 10.1016/j.pbi.2009.07.016. Epub 2009 Aug 28. Curr Opin Plant Biol. 2009. PMID: 19717332 Review.
Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors.
Filichkin SA, DiFazio SP, Brunner AM, Davis JM, Yang ZK, Kalluri UC, Arias RS, Etherington E, Tuskan GA, Strauss SH. Filichkin SA, et al. Plant Biotechnol J. 2007 Sep;5(5):615-26. doi: 10.1111/j.1467-7652.2007.00267.x. Epub 2007 Jun 15. Plant Biotechnol J. 2007. PMID: 17573806
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