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The Pfam protein families database.
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. Bateman A, et al. Among authors: finn rd. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41. doi: 10.1093/nar/gkh121. Nucleic Acids Res. 2004. PMID: 14681378 Free PMC article.
Identifying protein domains with the Pfam database.
Finn R, Griffiths-Jones S, Bateman A. Finn R, et al. Curr Protoc Bioinformatics. 2003 May;Chapter 2:Unit 2.5. doi: 10.1002/0471250953.bi0205s01. Curr Protoc Bioinformatics. 2003. PMID: 18428696
Identifying protein domains with the Pfam database.
Coggill P, Finn RD, Bateman A. Coggill P, et al. Among authors: finn rd. Curr Protoc Bioinformatics. 2008 Sep;Chapter 2:2.5.1-2.5.17. doi: 10.1002/0471250953.bi0205s23. Curr Protoc Bioinformatics. 2008. PMID: 18819075
DUFs: families in search of function.
Bateman A, Coggill P, Finn RD. Bateman A, et al. Among authors: finn rd. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1148-52. doi: 10.1107/S1744309110001685. Epub 2010 Mar 5. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010. PMID: 20944204 Free PMC article.
HMMER web server: 2015 update.
Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR. Finn RD, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W30-8. doi: 10.1093/nar/gkv397. Epub 2015 May 5. Nucleic Acids Res. 2015. PMID: 25943547 Free PMC article.
The HMMER Web Server for Protein Sequence Similarity Search.
Prakash A, Jeffryes M, Bateman A, Finn RD. Prakash A, et al. Among authors: finn rd. Curr Protoc Bioinformatics. 2017 Dec 8;60:3.15.1-3.15.23. doi: 10.1002/cpbi.40. Curr Protoc Bioinformatics. 2017. PMID: 29220076
Eleven quick tips to build a usable REST API for life sciences.
Tarkowska A, Carvalho-Silva D, Cook CE, Turner E, Finn RD, Yates AD. Tarkowska A, et al. Among authors: finn rd. PLoS Comput Biol. 2018 Dec 13;14(12):e1006542. doi: 10.1371/journal.pcbi.1006542. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30543619 Free PMC article. No abstract available.
261 results