Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

159 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
Different sequence environments of cysteines and half cystines in proteins. Application to predict disulfide forming residues.
Fiser A, Cserzö M, Tüdös E, Simon I. Fiser A, et al. FEBS Lett. 1992 May 11;302(2):117-20. doi: 10.1016/0014-5793(92)80419-h. FEBS Lett. 1992. PMID: 1633841
A possible origin of this difference is discussed and a simple method to predict cysteines and half cystines from the amino acid sequence is also presented....
A possible origin of this difference is discussed and a simple method to predict cysteines and half cystines from the amino ac
A word of caution about biological inference - Revisiting cysteine covalent state predictions.
Tüdős E, Mészáros B, Fiser A, Simon I. Tüdős E, et al. Among authors: fiser a. FEBS Open Bio. 2014 Mar 12;4:310-4. doi: 10.1016/j.fob.2014.03.003. eCollection 2014. FEBS Open Bio. 2014. PMID: 24918043 Free PMC article.
This illustrates that even high prediction accuracy is insufficient to validate implicit assumptions about a biological phenomenon. Correctly identifying the relevant underlying biochemical reasons for the success of a method is essential to gain proper biological i …
This illustrates that even high prediction accuracy is insufficient to validate implicit assumptions about a biological phenomenon. C …
Noncovalent cross-links in context with other structural and functional elements of proteins.
Tüdos E, Fiser A, Simon A, Dosztányi Z, Fuxreiter M, Magyar C, Simon I. Tüdos E, et al. Among authors: fiser a. J Chem Inf Comput Sci. 2004 Mar-Apr;44(2):347-51. doi: 10.1021/ci030409i. J Chem Inf Comput Sci. 2004. PMID: 15032510 Review.
The relation between the SCs and secondary structural elements as well as the relation between SCs and functionally important regions of proteins are presented to show a detailed picture of these clusters, which are believed to be primarily responsible for major aspects of …
The relation between the SCs and secondary structural elements as well as the relation between SCs and functionally important regions of pro …
Servers for sequence-structure relationship analysis and prediction.
Dosztányi Z, Magyar C, Tusnády GE, Cserzo M, Fiser A, Simon I. Dosztányi Z, et al. Among authors: fiser a. Nucleic Acids Res. 2003 Jul 1;31(13):3359-63. doi: 10.1093/nar/gkg589. Nucleic Acids Res. 2003. PMID: 12824327 Free PMC article.
Predicting protein conformation by statistical methods.
Simon I, Fiser A, Tusnády GE. Simon I, et al. Among authors: fiser a. Biochim Biophys Acta. 2001 Oct 18;1549(2):123-36. doi: 10.1016/s0167-4838(01)00253-9. Biochim Biophys Acta. 2001. PMID: 11690649 Review.
The unique folded structure makes a polypeptide a functional protein. The number of known sequences is about a hundred times larger than the number of known structures and the gap is increasing rapidly. ...Here we present a brief survey of protein stru …
The unique folded structure makes a polypeptide a functional protein. The number of known sequences is about a hundred …
Predicting the oxidation state of cysteines by multiple sequence alignment.
Fiser A, Simon I. Fiser A, et al. Bioinformatics. 2000 Mar;16(3):251-6. doi: 10.1093/bioinformatics/16.3.251. Bioinformatics. 2000. PMID: 10869018
Accurate prediction of whether a functionally or structurally important Cys occurs in the oxidized or thiol form would be helpful for molecular biology experiments and structure prediction. ...AVAILABILITY: A web server implementing the prediction method is availabl …
Accurate prediction of whether a functionally or structurally important Cys occurs in the oxidized or thiol form would be helpful for …
Stabilization centers in proteins: identification, characterization and predictions.
Dosztányi Z, Fiser A, Simon I. Dosztányi Z, et al. Among authors: fiser a. J Mol Biol. 1997 Oct 3;272(4):597-612. doi: 10.1006/jmbi.1997.1242. J Mol Biol. 1997. PMID: 9325115
The most frequent stabilization center residues are usually found at buried positions and have a hydrophobic or aromatic side-chain, but some polar or charged residues also play an important role in the stabilization. ...
The most frequent stabilization center residues are usually found at buried positions and have a hydrophobic or aromatic side-chain, …
Different sequence environments of amino acid residues involved and not involved in long-range interactions in proteins.
Tüdös E, Fiser A, Simon I. Tüdös E, et al. Among authors: fiser a. Int J Pept Protein Res. 1994 Feb;43(2):205-8. doi: 10.1111/j.1399-3011.1994.tb00524.x. Int J Pept Protein Res. 1994. PMID: 8200741
Even a limited amount of information on long-range interactions could help in conformational energy calculations of protein structures and could lead to a better understanding of how the primary structure of proteins determines their conformation. ...By using the si …
Even a limited amount of information on long-range interactions could help in conformational energy calculations of protein structure …
Chaos game representation of protein structures.
Fiser A, Tusnády GE, Simon I. Fiser A, et al. J Mol Graph. 1994 Dec;12(4):302-4, 295. doi: 10.1016/0263-7855(94)80109-6. J Mol Graph. 1994. PMID: 7696222
A further application will be presented for testing structure prediction methods using CGR....
A further application will be presented for testing structure prediction methods using CGR....
Conservation of amino acids in multiple alignments: aspartic acid has unexpected conservation.
Fiser A, Simon I, Barton GJ. Fiser A, et al. FEBS Lett. 1996 Nov 18;397(2-3):225-9. doi: 10.1016/s0014-5793(96)01181-7. FEBS Lett. 1996. PMID: 8955352

With the exception of Arg, Lys, Gly, Glu, Asp and Tyr, a relative conservation of > 2 suggests the amino acid will have a relative accessibility of < 50%. Observation of conserved Cys, Gly or Asp in a reliable multiple alignment suggests a positi

With the exception of Arg, Lys, Gly, Glu, Asp and Tyr, a relative conservation of > 2 suggests the amino acid will have a r …
159 results
Jump to page
Feedback