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CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
Flórez LA, Lammers CR, Michna R, Stülke J. Flórez LA, et al. Bioinformatics. 2010 Dec 1;26(23):2997-9. doi: 10.1093/bioinformatics/btq585. Epub 2010 Oct 14. Bioinformatics. 2010. PMID: 20947526
SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants.
Flórez LA, Gunka K, Polanía R, Tholen S, Stülke J. Flórez LA, et al. BMC Syst Biol. 2011 Jan 11;5:5. doi: 10.1186/1752-0509-5-5. BMC Syst Biol. 2011. PMID: 21219666 Free PMC article.
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Lammers CR, Flórez LA, Schmeisky AG, Roppel SF, Mäder U, Hamoen L, Stülke J. Lammers CR, et al. Among authors: florez la. Microbiology (Reading). 2010 Mar;156(Pt 3):849-859. doi: 10.1099/mic.0.035790-0. Epub 2009 Dec 3. Microbiology (Reading). 2010. PMID: 19959575
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Flórez LA, Roppel SF, Schmeisky AG, Lammers CR, Stülke J. Flórez LA, et al. Database (Oxford). 2009;2009:bap012. doi: 10.1093/database/bap012. Epub 2009 Sep 17. Database (Oxford). 2009. PMID: 20157485 Free PMC article.
SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis.
Mäder U, Schmeisky AG, Flórez LA, Stülke J. Mäder U, et al. Among authors: florez la. Nucleic Acids Res. 2012 Jan;40(Database issue):D1278-87. doi: 10.1093/nar/gkr923. Epub 2011 Nov 16. Nucleic Acids Res. 2012. PMID: 22096228 Free PMC article.
Mutational activation of the RocR activator and of a cryptic rocDEF promoter bypass loss of the initial steps of proline biosynthesis in Bacillus subtilis.
Zaprasis A, Hoffmann T, Wünsche G, Flórez LA, Stülke J, Bremer E. Zaprasis A, et al. Among authors: florez la. Environ Microbiol. 2014 Mar;16(3):701-17. doi: 10.1111/1462-2920.12193. Epub 2013 Jul 19. Environ Microbiol. 2014. PMID: 23869754