Foster J - Search Results

1

Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.

Evans J, Sheneman L, Foster J. Evans J, et al. Among authors: foster j. J Mol Evol. 2006 Jun;62(6):785-92. doi: 10.1007/s00239-005-0176-2. Epub 2006 Apr 28. J Mol Evol. 2006. PMID: 16752216

2

Clearcut: a fast implementation of relaxed neighbor joining.

Sheneman L, Evans J, Foster JA. Sheneman L, et al. Among authors: foster ja. Bioinformatics. 2006 Nov 15;22(22):2823-4. doi: 10.1093/bioinformatics/btl478. Epub 2006 Sep 18. Bioinformatics. 2006. PMID: 16982706

3

MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes.

Shyu C, Soule T, Bent SJ, Foster JA, Forney LJ. Shyu C, et al. Among authors: foster ja. Microb Ecol. 2007 May;53(4):562-70. doi: 10.1007/s00248-006-9106-0. Epub 2007 Apr 4. Microb Ecol. 2007. PMID: 17406775

4

Bacterial diversity in a glacier foreland of the high Arctic.

Schütte UM, Abdo Z, Foster J, Ravel J, Bunge J, Solheim B, Forney LJ. Schütte UM, et al. Among authors: foster j. Mol Ecol. 2010 Mar;19 Suppl 1:54-66. doi: 10.1111/j.1365-294X.2009.04479.x. Mol Ecol. 2010. PMID: 20331770

5

Seed: a user-friendly tool for exploring and visualizing microbial community data.

Beck D, Dennis C, Foster JA. Beck D, et al. Bioinformatics. 2015 Feb 15;31(4):602-3. doi: 10.1093/bioinformatics/btu693. Epub 2014 Oct 20. Bioinformatics. 2015. PMID: 25332377 Free PMC article.

6

MetAmp: combining amplicon data from multiple markers for OTU analysis.

Zhbannikov IY, Foster JA. Zhbannikov IY, et al. Bioinformatics. 2015 Jun 1;31(11):1830-2. doi: 10.1093/bioinformatics/btv049. Epub 2015 Jan 27. Bioinformatics. 2015. PMID: 25630378 Free PMC article.

7

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life.

Foster JA, Bunge J, Gilbert JA, Moore JH. Foster JA, et al. Brief Bioinform. 2012 Jul;13(4):420-9. doi: 10.1093/bib/bbr080. Epub 2012 Feb 4. Brief Bioinform. 2012. PMID: 22308073 Free PMC article. Review.

8

Network analysis suggests a potentially 'evil' alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities.

Sam Ma Z, Guan Q, Ye C, Zhang C, Foster JA, Forney LJ. Sam Ma Z, et al. Among authors: foster ja. Sci Rep. 2015 Feb 5;5:8275. doi: 10.1038/srep08275. Sci Rep. 2015. PMID: 25651890 Free PMC article.

9

OTUbase: an R infrastructure package for operational taxonomic unit data.

Beck D, Settles M, Foster JA. Beck D, et al. Bioinformatics. 2011 Jun 15;27(12):1700-1. doi: 10.1093/bioinformatics/btr196. Epub 2011 Apr 15. Bioinformatics. 2011. PMID: 21498398 Free PMC article.

10

Application of ecological network theory to the human microbiome.

Foster JA, Krone SM, Forney LJ. Foster JA, et al. Interdiscip Perspect Infect Dis. 2008;2008:839501. doi: 10.1155/2008/839501. Epub 2008 Oct 29. Interdiscip Perspect Infect Dis. 2008. PMID: 19259330 Free PMC article.

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