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Phylogenetic evidence of host-specific cryptic species in the anther smut fungus.
Le Gac M, Hood ME, Fournier E, Giraud T. Le Gac M, et al. Evolution. 2007 Jan;61(1):15-26. doi: 10.1111/j.1558-5646.2007.00002.x. Evolution. 2007. PMID: 17300424
Assessing the performance of single-copy genes for recovering robust phylogenies.
Aguileta G, Marthey S, Chiapello H, Lebrun MH, Rodolphe F, Fournier E, Gendrault-Jacquemard A, Giraud T. Aguileta G, et al. Syst Biol. 2008 Aug;57(4):613-27. doi: 10.1080/10635150802306527. Syst Biol. 2008. PMID: 18709599
Population genetics of fungal diseases of plants.
Giraud T, Enjalbert J, Fournier E, Delmote F, Dutech C. Giraud T, et al. Parasite. 2008 Sep;15(3):449-54. doi: 10.1051/parasite/2008153449. Parasite. 2008. PMID: 18814721 Review.
Deciphering Genome Content and Evolutionary Relationships of Isolates from the Fungus Magnaporthe oryzae Attacking Different Host Plants.
Chiapello H, Mallet L, Guérin C, Aguileta G, Amselem J, Kroj T, Ortega-Abboud E, Lebrun MH, Henrissat B, Gendrault A, Rodolphe F, Tharreau D, Fournier E. Chiapello H, et al. Genome Biol Evol. 2015 Oct 9;7(10):2896-912. doi: 10.1093/gbe/evv187. Genome Biol Evol. 2015. PMID: 26454013 Free PMC article.
Genes under positive selection in a model plant pathogenic fungus, Botrytis.
Aguileta G, Lengelle J, Chiapello H, Giraud T, Viaud M, Fournier E, Rodolphe F, Marthey S, Ducasse A, Gendrault A, Poulain J, Wincker P, Gout L. Aguileta G, et al. Infect Genet Evol. 2012 Jul;12(5):987-96. doi: 10.1016/j.meegid.2012.02.012. Epub 2012 Mar 3. Infect Genet Evol. 2012. PMID: 22406010
Rapidly evolving genes in pathogens: methods for detecting positive selection and examples among fungi, bacteria, viruses and protists.
Aguileta G, Refrégier G, Yockteng R, Fournier E, Giraud T. Aguileta G, et al. Infect Genet Evol. 2009 Jul;9(4):656-70. doi: 10.1016/j.meegid.2009.03.010. Epub 2009 Apr 6. Infect Genet Evol. 2009. PMID: 19442589 Review.
Host-pathogen coevolution can alternatively lead to a 'trench warfare', i.e., balancing selection, maintaining certain alleles at loci involved in host-pathogen recognition over long time scales. ...Here we review the methods for detecting genes under positive selection us …
Host-pathogen coevolution can alternatively lead to a 'trench warfare', i.e., balancing selection, maintaining certain alleles at loc …
Microsatellite loci to recognize species for the cheese starter and contaminating strains associated with cheese manufacturing.
Giraud F, Giraud T, Aguileta G, Fournier E, Samson R, Cruaud C, Lacoste S, Ropars J, Tellier A, Dupont J. Giraud F, et al. Int J Food Microbiol. 2010 Feb 28;137(2-3):204-13. doi: 10.1016/j.ijfoodmicro.2009.11.014. Epub 2009 Dec 3. Int J Food Microbiol. 2010. PMID: 20031244
Partition of the Botrytis cinerea complex in France using multiple gene genealogies.
Fournier E, Giraud T, Albertini C, Brygoo Y. Fournier E, et al. Mycologia. 2005 Nov-Dec;97(6):1251-67. doi: 10.3852/mycologia.97.6.1251. Mycologia. 2005. PMID: 16722218
Phylogenies and molecular analyzes of variance revealed no genetic structure according to the other suggested partitions for the B. cinerea complex (i.e., among host plants, between strains with and without transposable elements, nor between strains responsible for noble r …
Phylogenies and molecular analyzes of variance revealed no genetic structure according to the other suggested partitions for the B. cinerea …
Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies.
Liao J, Huang H, Meusnier I, Adreit H, Ducasse A, Bonnot F, Pan L, He X, Kroj T, Fournier E, Tharreau D, Gladieux P, Morel JB. Liao J, et al. Elife. 2016 Dec 23;5:e19377. doi: 10.7554/eLife.19377. Elife. 2016. PMID: 28008850 Free PMC article.
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