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2,083 results
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Applications of ultra-high-throughput sequencing.
Fox S, Filichkin S, Mockler TC. Fox S, et al. Methods Mol Biol. 2009;553:79-108. doi: 10.1007/978-1-60327-563-7_5. Methods Mol Biol. 2009. PMID: 19588102 Review.
Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae).
Fox SE, Preece J, Kimbrel JA, Marchini GL, Sage A, Youens-Clark K, Cruzan MB, Jaiswal P. Fox SE, et al. Appl Plant Sci. 2013 Mar 5;1(3):apps.1200011. doi: 10.3732/apps.1200011. eCollection 2013 Mar. Appl Plant Sci. 2013. PMID: 25202520 Free PMC article.
De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum.
Fox SE, Geniza M, Hanumappa M, Naithani S, Sullivan C, Preece J, Tiwari VK, Elser J, Leonard JM, Sage A, Gresham C, Kerhornou A, Bolser D, McCarthy F, Kersey P, Lazo GR, Jaiswal P. Fox SE, et al. PLoS One. 2014 May 12;9(5):e96855. doi: 10.1371/journal.pone.0096855. eCollection 2014. PLoS One. 2014. PMID: 24821410 Free PMC article.
Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress.
Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC. Priest HD, et al. PLoS One. 2014 Jan 29;9(1):e87499. doi: 10.1371/journal.pone.0087499. eCollection 2014. PLoS One. 2014. PMID: 24489928 Free PMC article.
GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.
Cumbie JS, Kimbrel JA, Di Y, Schafer DW, Wilhelm LJ, Fox SE, Sullivan CM, Curzon AD, Carrington JC, Mockler TC, Chang JH. Cumbie JS, et al. PLoS One. 2011;6(10):e25279. doi: 10.1371/journal.pone.0025279. Epub 2011 Oct 6. PLoS One. 2011. PMID: 21998647 Free PMC article.
Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.
Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. Filichkin SA, et al. PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9. PLoS One. 2011. PMID: 21694767 Free PMC article.
Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Filichkin SA, et al. Genome Res. 2010 Jan;20(1):45-58. doi: 10.1101/gr.093302.109. Epub 2009 Oct 26. Genome Res. 2010. PMID: 19858364 Free PMC article.
Expression, splicing, and evolution of the myosin gene family in plants.
Peremyslov VV, Mockler TC, Filichkin SA, Fox SE, Jaiswal P, Makarova KS, Koonin EV, Dolja VV. Peremyslov VV, et al. Plant Physiol. 2011 Mar;155(3):1191-204. doi: 10.1104/pp.110.170720. Epub 2011 Jan 13. Plant Physiol. 2011. PMID: 21233331 Free PMC article.
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