Francisco AP - Search Results

1

Vaz C, Francisco AP, Silva M, Jolley KA, Bray JE, Pouseele H, Rothganger J, Ramirez M, Carriço JA. Vaz C, et al. Among authors: francisco ap. J Biomed Semantics. 2014 Oct 18;5(1):43. doi: 10.1186/2041-1480-5-43. eCollection 2014. J Biomed Semantics. 2014. PMID: 25584183 Free PMC article.

2

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Francisco AP, Vaz C, Monteiro PT, Melo-Cristino J, Ramirez M, Carriço JA. Francisco AP, et al. BMC Bioinformatics. 2012 May 8;13:87. doi: 10.1186/1471-2105-13-87. BMC Bioinformatics. 2012. PMID: 22568821 Free PMC article.

3

Fast phylogenetic inference from typing data.

Carriço JA, Crochemore M, Francisco AP, Pissis SP, Ribeiro-Gonçalves B, Vaz C. Carriço JA, et al. Among authors: francisco ap. Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/s13015-017-0119-7. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 29467814 Free PMC article.

4

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.

Nascimento M, Sousa A, Ramirez M, Francisco AP, Carriço JA, Vaz C. Nascimento M, et al. Among authors: francisco ap. Bioinformatics. 2017 Jan 1;33(1):128-129. doi: 10.1093/bioinformatics/btw582. Epub 2016 Sep 6. Bioinformatics. 2017. PMID: 27605102

5

Distance-based phylogenetic inference from typing data: a unifying view.

Vaz C, Nascimento M, Carriço JA, Rocher T, Francisco AP. Vaz C, et al. Among authors: francisco ap. Brief Bioinform. 2021 May 20;22(3):bbaa147. doi: 10.1093/bib/bbaa147. Brief Bioinform. 2021. PMID: 32734294 Review.

6

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis.

Teixeira AS, Monteiro PT, Carriço JA, Ramirez M, Francisco AP. Teixeira AS, et al. Among authors: francisco ap. PLoS One. 2015 Mar 23;10(3):e0119315. doi: 10.1371/journal.pone.0119315. eCollection 2015. PLoS One. 2015. PMID: 25799056 Free PMC article.

7

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.

Ribeiro-Gonçalves B, Francisco AP, Vaz C, Ramirez M, Carriço JA. Ribeiro-Gonçalves B, et al. Among authors: francisco ap. Nucleic Acids Res. 2016 Jul 8;44(W1):W246-51. doi: 10.1093/nar/gkw359. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131357 Free PMC article.

8

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.

Francisco AP, Bugalho M, Ramirez M, Carriço JA. Francisco AP, et al. BMC Bioinformatics. 2009 May 18;10:152. doi: 10.1186/1471-2105-10-152. BMC Bioinformatics. 2009. PMID: 19450271 Free PMC article.

9

Large-Scale Simulations of Bacterial Populations Over Complex Networks.

Teixeira AS, Monteiro PT, Carriço JA, Santos FC, Francisco AP. Teixeira AS, et al. Among authors: francisco ap. J Comput Biol. 2018 Aug;25(8):850-861. doi: 10.1089/cmb.2018.0083. Epub 2018 Jul 9. J Comput Biol. 2018. PMID: 29985650

10

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.

Zhou Z, Alikhan NF, Sergeant MJ, Luhmann N, Vaz C, Francisco AP, Carriço JA, Achtman M. Zhou Z, et al. Among authors: francisco ap. Genome Res. 2018 Sep;28(9):1395-1404. doi: 10.1101/gr.232397.117. Epub 2018 Jul 26. Genome Res. 2018. PMID: 30049790 Free PMC article.

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