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Year Number of Results
2012 4
2013 1
2014 4
2015 4
2017 5
2018 1
2019 4
2020 0
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22 results
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Page 1
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program.
Wyler E, Franke V, Menegatti J, Kocks C, Boltengagen A, Praktiknjo S, Walch-Rückheim B, Bosse J, Rajewsky N, Grässer F, Akalin A, Landthaler M. Wyler E, et al. Among authors: franke v. Nat Commun. 2019 Oct 25;10(1):4878. doi: 10.1038/s41467-019-12894-z. Nat Commun. 2019. PMID: 31653857 Free PMC article.
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes.
Franke V, Ganesh S, Karlic R, Malik R, Pasulka J, Horvat F, Kuzman M, Fulka H, Cernohorska M, Urbanova J, Svobodova E, Ma J, Suzuki Y, Aoki F, Schultz RM, Vlahovicek K, Svoboda P. Franke V, et al. Genome Res. 2017 Aug;27(8):1384-1394. doi: 10.1101/gr.216150.116. Epub 2017 May 18. Genome Res. 2017. PMID: 28522611 Free PMC article.
Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.
Ciolli Mattioli C, Rom A, Franke V, Imami K, Arrey G, Terne M, Woehler A, Akalin A, Ulitsky I, Chekulaeva M. Ciolli Mattioli C, et al. Among authors: franke v. Nucleic Acids Res. 2019 Mar 18;47(5):2560-2573. doi: 10.1093/nar/gky1270. Nucleic Acids Res. 2019. PMID: 30590745 Free PMC article.
RNA localization is a key determinant of neurite-enriched proteome.
Zappulo A, van den Bruck D, Ciolli Mattioli C, Franke V, Imami K, McShane E, Moreno-Estelles M, Calviello L, Filipchyk A, Peguero-Sanchez E, Müller T, Woehler A, Birchmeier C, Merino E, Rajewsky N, Ohler U, Mazzoni EO, Selbach M, Akalin A, Chekulaeva M. Zappulo A, et al. Among authors: franke v. Nat Commun. 2017 Sep 19;8(1):583. doi: 10.1038/s41467-017-00690-6. Nat Commun. 2017. PMID: 28928394 Free PMC article.
Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma.
von Hoff L, Kärgel E, Franke V, McShane E, Schulz-Beiss KW, Patone G, Schleussner N, Kolesnichenko M, Hübner N, Daumke O, Selbach M, Akalin A, Mathas S, Scheidereit C. von Hoff L, et al. Among authors: franke v. Blood. 2019 Mar 28;133(13):1489-1494. doi: 10.1182/blood-2018-08-871293. Epub 2019 Jan 29. Blood. 2019. PMID: 30696620
Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection.
Wyler E, Menegatti J, Franke V, Kocks C, Boltengagen A, Hennig T, Theil K, Rutkowski A, Ferrai C, Baer L, Kermas L, Friedel C, Rajewsky N, Akalin A, Dölken L, Grässer F, Landthaler M. Wyler E, et al. Among authors: franke v. Genome Biol. 2017 Oct 31;18(1):209. doi: 10.1186/s13059-017-1329-5. Genome Biol. 2017. PMID: 29089033 Free PMC article.
Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse.
Svoboda P, Franke V, Schultz RM. Svoboda P, et al. Among authors: franke v. Curr Top Dev Biol. 2015;113:305-49. doi: 10.1016/bs.ctdb.2015.06.004. Epub 2015 Jul 29. Curr Top Dev Biol. 2015. PMID: 26358877 Review.
PiGx: reproducible genomics analysis pipelines with GNU Guix.
Wurmus R, Uyar B, Osberg B, Franke V, Gosdschan A, Wreczycka K, Ronen J, Akalin A. Wurmus R, et al. Among authors: franke v. Gigascience. 2018 Dec 1;7(12):giy123. doi: 10.1093/gigascience/giy123. Gigascience. 2018. PMID: 30277498 Free PMC article.
HOT or not: examining the basis of high-occupancy target regions.
Wreczycka K, Franke V, Uyar B, Wurmus R, Bulut S, Tursun B, Akalin A. Wreczycka K, et al. Among authors: franke v. Nucleic Acids Res. 2019 Jun 20;47(11):5735-5745. doi: 10.1093/nar/gkz460. Nucleic Acids Res. 2019. PMID: 31114922 Free PMC article.
Long non-coding RNA exchange during the oocyte-to-embryo transition in mice.
Karlic R, Ganesh S, Franke V, Svobodova E, Urbanova J, Suzuki Y, Aoki F, Vlahovicek K, Svoboda P. Karlic R, et al. Among authors: franke v. DNA Res. 2017 Apr 1;24(2):129-141. doi: 10.1093/dnares/dsw058. DNA Res. 2017. PMID: 28087610 Free PMC article.
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