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Archaeal aminoacyl-tRNA synthetases interact with the ribosome to recycle tRNAs.
Godinic-Mikulcic V, Jaric J, Greber BJ, Franke V, Hodnik V, Anderluh G, Ban N, Weygand-Durasevic I. Godinic-Mikulcic V, et al. Among authors: franke v. Nucleic Acids Res. 2014 Apr;42(8):5191-201. doi: 10.1093/nar/gku164. Epub 2014 Feb 24. Nucleic Acids Res. 2014. PMID: 24569352 Free PMC article.
HOT or not: examining the basis of high-occupancy target regions.
Wreczycka K, Franke V, Uyar B, Wurmus R, Bulut S, Tursun B, Akalin A. Wreczycka K, et al. Among authors: franke v. Nucleic Acids Res. 2019 Jun 20;47(11):5735-5745. doi: 10.1093/nar/gkz460. Nucleic Acids Res. 2019. PMID: 31114922 Free PMC article.
The SEQC2 epigenomics quality control (EpiQC) study.
Foox J, Nordlund J, Lalancette C, Gong T, Lacey M, Lent S, Langhorst BW, Ponnaluri VKC, Williams L, Padmanabhan KR, Cavalcante R, Lundmark A, Butler D, Mozsary C, Gurvitch J, Greally JM, Suzuki M, Menor M, Nasu M, Alonso A, Sheridan C, Scherer A, Bruinsma S, Golda G, Muszynska A, Łabaj PP, Campbell MA, Wos F, Raine A, Liljedahl U, Axelsson T, Wang C, Chen Z, Yang Z, Li J, Yang X, Wang H, Melnick A, Guo S, Blume A, Franke V, Ibanez de Caceres I, Rodriguez-Antolin C, Rosas R, Davis JW, Ishii J, Megherbi DB, Xiao W, Liao W, Xu J, Hong H, Ning B, Tong W, Akalin A, Wang Y, Deng Y, Mason CE. Foox J, et al. Among authors: franke v. Genome Biol. 2021 Dec 6;22(1):332. doi: 10.1186/s13059-021-02529-2. Genome Biol. 2021. PMID: 34872606 Free PMC article.
RNA localization is a key determinant of neurite-enriched proteome.
Zappulo A, van den Bruck D, Ciolli Mattioli C, Franke V, Imami K, McShane E, Moreno-Estelles M, Calviello L, Filipchyk A, Peguero-Sanchez E, Müller T, Woehler A, Birchmeier C, Merino E, Rajewsky N, Ohler U, Mazzoni EO, Selbach M, Akalin A, Chekulaeva M. Zappulo A, et al. Among authors: franke v. Nat Commun. 2017 Sep 19;8(1):583. doi: 10.1038/s41467-017-00690-6. Nat Commun. 2017. PMID: 28928394 Free PMC article.
PiGx: reproducible genomics analysis pipelines with GNU Guix.
Wurmus R, Uyar B, Osberg B, Franke V, Gosdschan A, Wreczycka K, Ronen J, Akalin A. Wurmus R, et al. Among authors: franke v. Gigascience. 2018 Dec 1;7(12):giy123. doi: 10.1093/gigascience/giy123. Gigascience. 2018. PMID: 30277498 Free PMC article.
Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng W, Kukalev A, Harabula I, Zea-Redondo L, Szabó D, Meijer M, Serebreni L, Zhang Y, Bianco S, Chiariello AM, Irastorza-Azcarate I, Thieme CJ, Sparks TM, Carvalho S, Fiorillo L, Musella F, Irani E, Torlai Triglia E, Kolodziejczyk AA, Abentung A, Apostolova G, Paul EJ, Franke V, Kempfer R, Akalin A, Teichmann SA, Dechant G, Ungless MA, Nicodemi M, Welch L, Castelo-Branco G, Pombo A. Winick-Ng W, et al. Among authors: franke v. Nature. 2021 Nov;599(7886):684-691. doi: 10.1038/s41586-021-04081-2. Epub 2021 Nov 17. Nature. 2021. PMID: 34789882 Free PMC article.
89 results