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49 results

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Page 1
Targeting mechanisms of tailed bacteriophages.
Nobrega FL, Vlot M, de Jonge PA, Dreesens LL, Beaumont HJE, Lavigne R, Dutilh BE, Brouns SJJ. Nobrega FL, et al. Nat Rev Microbiol. 2018 Dec;16(12):760-773. doi: 10.1038/s41579-018-0070-8. Nat Rev Microbiol. 2018. PMID: 30104690 Review.
Bacterial defense systems exhibit synergistic anti-phage activity.
Wu Y, Garushyants SK, van den Hurk A, Aparicio-Maldonado C, Kushwaha SK, King CM, Ou Y, Todeschini TC, Clokie MRJ, Millard AD, Gençay YE, Koonin EV, Nobrega FL. Wu Y, et al. Among authors: nobrega fl. Cell Host Microbe. 2024 Apr 10;32(4):557-572.e6. doi: 10.1016/j.chom.2024.01.015. Epub 2024 Feb 22. Cell Host Microbe. 2024. PMID: 38402614 Free PMC article.
Building pangenome graphs.
Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Golicz AA, Nahnsen S, Yang Z, Mwaniki MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Huang S, Weigel D, Soranzo N, Colonna V, Williams RW, Prins P. Garrison E, et al. Among authors: nobrega fl. Nat Methods. 2024 Nov;21(11):2008-2012. doi: 10.1038/s41592-024-02430-3. Epub 2024 Oct 21. Nat Methods. 2024. PMID: 39433878
Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites.
Zhang Z, Todeschini TC, Wu Y, Kogay R, Naji A, Cardenas Rodriguez J, Mondi R, Kaganovich D, Taylor DW, Bravo JPK, Teplova M, Amen T, Koonin EV, Patel DJ, Nobrega FL. Zhang Z, et al. Among authors: nobrega fl. Cell. 2025 Oct 16;188(21):5862-5877.e23. doi: 10.1016/j.cell.2025.07.002. Epub 2025 Jul 28. Cell. 2025. PMID: 40730155 Free PMC article.
Building pangenome graphs.
Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Nahnsen S, Yang Z, Mwaniki MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Soranzo N, Colonna V, Williams RW, Prins P. Garrison E, et al. Among authors: nobrega fl. bioRxiv [Preprint]. 2024 Oct 2:2023.04.05.535718. doi: 10.1101/2023.04.05.535718. bioRxiv. 2024. Update in: Nat Methods. 2024 Nov;21(11):2008-2012. doi: 10.1038/s41592-024-02430-3. PMID: 37066137 Free PMC article. Updated. Preprint.
Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Bacterial Viruses Subcommittee, 2025.
Turner D, Adriaenssens EM, Amann RI, Bardy P, Bartlau N, Barylski J, Błażejak S, Bouzari M, Briegel A, Briers Y, Carrillo D, Chen X, Claessen D, Cook R, Crisci MA, Dechesne A, Deptula P, Dutilh BE, Ely B, Fieseler L, Fogg PCM, Fukudome A, Ganjoor MS, Gientka I, Holmfeldt K, Kalatzis PG, Kauffman KM, Kempff A, Knezevic P, Koonin EV, Kropinski AM, Krupovic M, Kurtböke I, Lambon K, Lavigne R, Lehman SM, Liu HT, Lood C, Lurz R, Mäntynen S, Matrishin CB, Middelboe M, Millard AD, Moraru C, Nielsen DS, Nobrega FL, Nunoura T, Oksanen HM, Ongenae V, Parra B, Pas C, Pogliano J, Poranen MM, Potipimpanon S, Prichard A, Pye HV, Rothschild-Rodriguez D, Rozen DE, Santini JM, Sha Y, Shymialevich D, Sokołowska B, Soleimani-Delfan A, Średnicka P, Tavares P, Telatin A, Tolstoy I, Urayama SI, van Neer V, Vogensen FK, Wen Q, Wichels A, Wójcicki M, Ictv Taxonomy Summary Consortium; ICTV Taxonomy Summary Consortium. Turner D, et al. Among authors: nobrega fl. J Gen Virol. 2025 Jul;106(7):002111. doi: 10.1099/jgv.0.002111. J Gen Virol. 2025. PMID: 40711892 Free PMC article.
Phage engineering to overcome bacterial Tmn immunity in Dhillonvirus.
Yamashita W, Chihara K, Azam AH, Kondo K, Ojima S, Tamura A, Imanaka M, Nobrega FL, Takahashi Y, Watashi K, Tsuneda S, Kiga K. Yamashita W, et al. Among authors: nobrega fl. Commun Biol. 2025 Feb 22;8(1):290. doi: 10.1038/s42003-025-07730-8. Commun Biol. 2025. PMID: 39987292 Free PMC article.
49 results