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Modularity and homology: modelling of the titin type I modules and their interfaces.
Amodeo P, Fraternali F, Lesk AM, Pastore A. Amodeo P, et al. Among authors: fraternali f. J Mol Biol. 2001 Aug 10;311(2):283-96. doi: 10.1006/jmbi.2001.4797. J Mol Biol. 2001. PMID: 11478861
Modularity and homology: modelling of the type II module family from titin.
Fraternali F, Pastore A. Fraternali F, et al. J Mol Biol. 1999 Jul 9;290(2):581-93. doi: 10.1006/jmbi.1999.2876. J Mol Biol. 1999. PMID: 10390355
An efficient mean solvation force model for use in molecular dynamics simulations of proteins in aqueous solution.
Fraternali F, Van Gunsteren WF. Fraternali F, et al. J Mol Biol. 1996 Mar 15;256(5):939-48. doi: 10.1006/jmbi.1996.0139. J Mol Biol. 1996. PMID: 8601844
A refined, efficient mean solvation force model that includes the interior volume contribution.
Allison JR, Boguslawski K, Fraternali F, van Gunsteren WF. Allison JR, et al. Among authors: fraternali f. J Phys Chem B. 2011 Apr 21;115(15):4547-57. doi: 10.1021/jp2017117. Epub 2011 Mar 24. J Phys Chem B. 2011. PMID: 21434626
Protein-water interactions in MD simulations: POPS/POPSCOMP solvent accessibility analysis, solvation forces and hydration sites.
Fornili A, Autore F, Chakroun N, Martinez P, Fraternali F. Fornili A, et al. Among authors: fraternali f. Methods Mol Biol. 2012;819:375-92. doi: 10.1007/978-1-61779-465-0_23. Methods Mol Biol. 2012. PMID: 22183548
Calcium regulates scallop muscle by changing myosin flexibility.
Azzu V, Yadin D, Patel H, Fraternali F, Chantler PD, Molloy JE. Azzu V, et al. Among authors: fraternali f. Eur Biophys J. 2006 Apr;35(4):302-12. doi: 10.1007/s00249-005-0036-4. Epub 2006 Jan 11. Eur Biophys J. 2006. PMID: 16404592
Design and application of implicit solvent models in biomolecular simulations.
Kleinjung J, Fraternali F. Kleinjung J, et al. Among authors: fraternali f. Curr Opin Struct Biol. 2014 Apr;25(100):126-34. doi: 10.1016/ Epub 2014 May 20. Curr Opin Struct Biol. 2014. PMID: 24841242 Free PMC article. Review.
Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome.
Fraternali F, Cavallo L. Fraternali F, et al. Nucleic Acids Res. 2002 Jul 1;30(13):2950-60. doi: 10.1093/nar/gkf373. Nucleic Acids Res. 2002. PMID: 12087181 Free PMC article.
Promiscuous antibodies characterised by their physico-chemical properties: From sequence to structure and back.
Laffy JMJ, Dodev T, Macpherson JA, Townsend C, Lu HC, Dunn-Walters D, Fraternali F. Laffy JMJ, et al. Among authors: fraternali f. Prog Biophys Mol Biol. 2017 Sep;128:47-56. doi: 10.1016/j.pbiomolbio.2016.09.002. Epub 2016 Sep 14. Prog Biophys Mol Biol. 2017. PMID: 27639634 Free PMC article.
An immunoglobulin-like fold in a major plant allergen: the solution structure of Phl p 2 from timothy grass pollen.
De Marino S, Morelli MA, Fraternali F, Tamborini E, Musco G, Vrtala S, Dolecek C, Arosio P, Valenta R, Pastore A. De Marino S, et al. Among authors: fraternali f. Structure. 1999 Aug 15;7(8):943-52. doi: 10.1016/s0969-2126(99)80121-x. Structure. 1999. PMID: 10467147
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