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Differential expression analysis of RNA-seq data at single-base resolution.
Biostatistics. 2014 Jul;15(3):413-26. doi: 10.1093/biostatistics/kxt053. Epub 2014 Jan 6.
Biostatistics. 2014.
PMID: 24398039
Free PMC article.
ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets.
Frazee AC, Langmead B, Leek JT.
Frazee AC, et al.
BMC Bioinformatics. 2011 Nov 16;12:449. doi: 10.1186/1471-2105-12-449.
BMC Bioinformatics. 2011.
PMID: 22087737
Free PMC article.
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Polyester: simulating RNA-seq datasets with differential transcript expression.
Frazee AC, Jaffe AE, Langmead B, Leek JT.
Frazee AC, et al.
Bioinformatics. 2015 Sep 1;31(17):2778-84. doi: 10.1093/bioinformatics/btv272. Epub 2015 Apr 28.
Bioinformatics. 2015.
PMID: 25926345
Free PMC article.
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Flexible expressed region analysis for RNA-seq with derfinder.
Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE.
Collado-Torres L, et al. Among authors: frazee ac.
Nucleic Acids Res. 2017 Jan 25;45(2):e9. doi: 10.1093/nar/gkw852. Epub 2016 Sep 29.
Nucleic Acids Res. 2017.
PMID: 27694310
Free PMC article.
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Ballgown bridges the gap between transcriptome assembly and expression analysis.
Frazee AC, Pertea G, Jaffe AE, Langmead B, Salzberg SL, Leek JT.
Frazee AC, et al.
Nat Biotechnol. 2015 Mar;33(3):243-6. doi: 10.1038/nbt.3172.
Nat Biotechnol. 2015.
PMID: 25748911
Free PMC article.
No abstract available.
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Integrity of Induced Pluripotent Stem Cell (iPSC) Derived Megakaryocytes as Assessed by Genetic and Transcriptomic Analysis.
Kammers K, Taub MA, Ruczinski I, Martin J, Yanek LR, Frazee A, Gao Y, Hoyle D, Faraday N, Becker DM, Cheng L, Wang ZZ, Leek JT, Becker LC, Mathias RA.
Kammers K, et al.
PLoS One. 2017 Jan 20;12(1):e0167794. doi: 10.1371/journal.pone.0167794. eCollection 2017.
PLoS One. 2017.
PMID: 28107356
Free PMC article.
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