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PHY.FI: fast and easy online creation and manipulation of phylogeny color figures.
Fredslund J. Fredslund J. BMC Bioinformatics. 2006 Jun 22;7:315. doi: 10.1186/1471-2105-7-315. BMC Bioinformatics. 2006. PMID: 16792795 Free PMC article.
Primique: automatic design of specific PCR primers for each sequence in a family.
Fredslund J, Lange M. Fredslund J, et al. BMC Bioinformatics. 2007 Oct 3;8:369. doi: 10.1186/1471-2105-8-369. BMC Bioinformatics. 2007. PMID: 17910777 Free PMC article.
A general pipeline for the development of anchor markers for comparative genomics in plants.
Fredslund J, Madsen LH, Hougaard BK, Nielsen AM, Bertioli D, Sandal N, Stougaard J, Schauser L. Fredslund J, et al. BMC Genomics. 2006 Aug 14;7:207. doi: 10.1186/1471-2164-7-207. BMC Genomics. 2006. PMID: 16907970 Free PMC article.
GeMprospector--online design of cross-species genetic marker candidates in legumes and grasses.
Fredslund J, Madsen LH, Hougaard BK, Sandal N, Stougaard J, Bertioli D, Schauser L. Fredslund J, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W670-5. doi: 10.1093/nar/gkl201. Nucleic Acids Res. 2006. PMID: 16845095 Free PMC article.
PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs.
Fredslund J, Schauser L, Madsen LH, Sandal N, Stougaard J. Fredslund J, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W516-20. doi: 10.1093/nar/gki425. Nucleic Acids Res. 2005. PMID: 15980525 Free PMC article.
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.
Dalevi D, Desantis TZ, Fredslund J, Andersen GL, Markowitz VM, Hugenholtz P. Dalevi D, et al. Among authors: fredslund j. BMC Bioinformatics. 2007 Oct 18;8:402. doi: 10.1186/1471-2105-8-402. BMC Bioinformatics. 2007. PMID: 17949484 Free PMC article.
DATFAP: a database of primers and homology alignments for transcription factors from 13 plant species.
Fredslund J. Fredslund J. BMC Genomics. 2008 Mar 25;9:140. doi: 10.1186/1471-2164-9-140. BMC Genomics. 2008. PMID: 18366738 Free PMC article.
Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis.
Hougaard BK, Madsen LH, Sandal N, de Carvalho Moretzsohn M, Fredslund J, Schauser L, Nielsen AM, Rohde T, Sato S, Tabata S, Bertioli DJ, Stougaard J. Hougaard BK, et al. Among authors: fredslund j. Genetics. 2008 Aug;179(4):2299-312. doi: 10.1534/genetics.108.090084. Epub 2008 Aug 9. Genetics. 2008. PMID: 18689902 Free PMC article.
An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.
Bertioli DJ, Moretzsohn MC, Madsen LH, Sandal N, Leal-Bertioli SC, Guimarães PM, Hougaard BK, Fredslund J, Schauser L, Nielsen AM, Sato S, Tabata S, Cannon SB, Stougaard J. Bertioli DJ, et al. Among authors: fredslund j. BMC Genomics. 2009 Jan 23;10:45. doi: 10.1186/1471-2164-10-45. BMC Genomics. 2009. PMID: 19166586 Free PMC article.
discomark: nuclear marker discovery from orthologous sequences using draft genome data.
Rutschmann S, Detering H, Simon S, Fredslund J, Monaghan MT. Rutschmann S, et al. Among authors: fredslund j. Mol Ecol Resour. 2017 Mar;17(2):257-266. doi: 10.1111/1755-0998.12576. Epub 2016 Aug 23. Mol Ecol Resour. 2017. PMID: 27454666
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