Freudenberg JM - Search Results

1

Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors.

Oldfield AJ, Yang P, Conway AE, Cinghu S, Freudenberg JM, Yellaboina S, Jothi R. Oldfield AJ, et al. Among authors: freudenberg jm. Mol Cell. 2014 Sep 4;55(5):708-22. doi: 10.1016/j.molcel.2014.07.005. Epub 2014 Aug 14. Mol Cell. 2014. PMID: 25132174 Free PMC article.

2

Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis.

Cinghu S, Yellaboina S, Freudenberg JM, Ghosh S, Zheng X, Oldfield AJ, Lackford BL, Zaykin DV, Hu G, Jothi R. Cinghu S, et al. Among authors: freudenberg jm. Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):E1581-90. doi: 10.1073/pnas.1318598111. Epub 2014 Apr 7. Proc Natl Acad Sci U S A. 2014. PMID: 24711389 Free PMC article.

3

Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity.

Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R. Freudenberg JM, et al. Nucleic Acids Res. 2012 Apr;40(8):3364-77. doi: 10.1093/nar/gkr1253. Epub 2011 Dec 30. Nucleic Acids Res. 2012. PMID: 22210859 Free PMC article.

4

Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation.

Zheng X, Dumitru R, Lackford BL, Freudenberg JM, Singh AP, Archer TK, Jothi R, Hu G. Zheng X, et al. Among authors: freudenberg jm. Stem Cells. 2012 May;30(5):910-22. doi: 10.1002/stem.1070. Stem Cells. 2012. PMID: 22367759 Free PMC article.

5

Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal.

Lackford B, Yao C, Charles GM, Weng L, Zheng X, Choi EA, Xie X, Wan J, Xing Y, Freudenberg JM, Yang P, Jothi R, Hu G, Shi Y. Lackford B, et al. Among authors: freudenberg jm. EMBO J. 2014 Apr 16;33(8):878-89. doi: 10.1002/embj.201386537. Epub 2014 Mar 4. EMBO J. 2014. PMID: 24596251 Free PMC article.

6

Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells.

Menendez D, Nguyen TA, Freudenberg JM, Mathew VJ, Anderson CW, Jothi R, Resnick MA. Menendez D, et al. Among authors: freudenberg jm. Nucleic Acids Res. 2013 Aug;41(15):7286-301. doi: 10.1093/nar/gkt504. Epub 2013 Jun 17. Nucleic Acids Res. 2013. PMID: 23775793 Free PMC article.

7

Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation.

Li L, Freudenberg J, Cui K, Dale R, Song SH, Dean A, Zhao K, Jothi R, Love PE. Li L, et al. Blood. 2013 May 30;121(22):4575-85. doi: 10.1182/blood-2013-01-479451. Epub 2013 Apr 22. Blood. 2013. PMID: 23610375 Free PMC article.

8

Retinoic acid-related orphan receptor γ (RORγ): a novel participant in the diurnal regulation of hepatic gluconeogenesis and insulin sensitivity.

Takeda Y, Kang HS, Freudenberg J, DeGraff LM, Jothi R, Jetten AM. Takeda Y, et al. PLoS Genet. 2014 May 15;10(5):e1004331. doi: 10.1371/journal.pgen.1004331. eCollection 2014. PLoS Genet. 2014. PMID: 24831725 Free PMC article.

9

Genome-wide signatures of transcription factor activity: connecting transcription factors, disease, and small molecules.

Chen J, Hu Z, Phatak M, Reichard J, Freudenberg JM, Sivaganesan S, Medvedovic M. Chen J, et al. Among authors: freudenberg jm. PLoS Comput Biol. 2013;9(9):e1003198. doi: 10.1371/journal.pcbi.1003198. Epub 2013 Sep 5. PLoS Comput Biol. 2013. PMID: 24039560 Free PMC article.

10

Mining emerging biomedical literature for understanding disease associations in drug discovery.

Rajpal DK, Qu XA, Freudenberg JM, Kumar VD. Rajpal DK, et al. Among authors: freudenberg jm. Methods Mol Biol. 2014;1159:171-206. doi: 10.1007/978-1-4939-0709-0_11. Methods Mol Biol. 2014. PMID: 24788268 Review.

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