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RNA Binding Proteins Control Transdifferentiation of Hepatic Stellate Cells into Myofibroblasts.
Wang S, Jung Y, Hyun J, Friedersdorf M, Oh SH, Kim J, Premont RT, Keene JD, Diehl AM. Wang S, et al. Cell Physiol Biochem. 2018;48(3):1215-1229. doi: 10.1159/000491987. Epub 2018 Jul 25. Cell Physiol Biochem. 2018. PMID: 30045014
Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq.
Nicholson CO, Friedersdorf M, Keene JD. Nicholson CO, et al. RNA. 2017 Jan;23(1):32-46. doi: 10.1261/rna.058115.116. Epub 2016 Oct 14. RNA. 2017. PMID: 27742911 Free PMC article.
Coordinated posttranscriptional mRNA population dynamics during T-cell activation.
Mukherjee N, Lager PJ, Friedersdorf MB, Thompson MA, Keene JD. Mukherjee N, et al. Among authors: friedersdorf mb. Mol Syst Biol. 2009;5:288. doi: 10.1038/msb.2009.44. Epub 2009 Jul 28. Mol Syst Biol. 2009. PMID: 19638969 Free PMC article.
DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
Nicholson CO, Friedersdorf MB, Bisogno LS, Keene JD. Nicholson CO, et al. Among authors: friedersdorf mb. Methods. 2017 Apr 15;118-119:16-23. doi: 10.1016/j.ymeth.2016.11.004. Epub 2016 Nov 10. Methods. 2017. PMID: 27840290 Free PMC article.
SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells.
Smola MJ, Christy TW, Inoue K, Nicholson CO, Friedersdorf M, Keene JD, Lee DM, Calabrese JM, Weeks KM. Smola MJ, et al. Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10322-7. doi: 10.1073/pnas.1600008113. Epub 2016 Aug 30. Proc Natl Acad Sci U S A. 2016. PMID: 27578869 Free PMC article.
Ras Post-transcriptionally Enhances a Pre-malignantly Primed EMT to Promote Invasion.
Bisogno LS, Friedersdorf MB, Keene JD. Bisogno LS, et al. Among authors: friedersdorf mb. iScience. 2018 Jun 29;4:97-108. doi: 10.1016/j.isci.2018.05.011. Epub 2018 May 18. iScience. 2018. PMID: 30240757 Free PMC article.
The RNA-binding protein DND1 acts sequentially as a negative regulator of pluripotency and a positive regulator of epigenetic modifiers required for germ cell reprogramming.
Ruthig VA, Friedersdorf MB, Garness JA, Munger SC, Bunce C, Keene JD, Capel B. Ruthig VA, et al. Among authors: friedersdorf mb. Development. 2019 Jul 25;146(19):dev175950. doi: 10.1242/dev.175950. Development. 2019. PMID: 31253634 Free article.