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Computational studies of protein folding.
Friesner RA, Gunn JR. Friesner RA, et al. Annu Rev Biophys Biomol Struct. 1996;25:315-42. doi: 10.1146/ Annu Rev Biophys Biomol Struct. 1996. PMID: 8800473 Review.
New methods for electronic structure calculations on large molecules.
Friesner RA. Friesner RA. Annu Rev Phys Chem. 1991;42:341-67. doi: 10.1146/annurev.pc.42.100191.002013. Annu Rev Phys Chem. 1991. PMID: 1747190 Review. No abstract available.
Dewetting transitions in protein cavities.
Young T, Hua L, Huang X, Abel R, Friesner R, Berne BJ. Young T, et al. Proteins. 2010 Jun;78(8):1856-69. doi: 10.1002/prot.22699. Proteins. 2010. PMID: 20225258 Free PMC article.
Docking and free energy perturbation studies of ligand binding in the kappa opioid receptor.
Goldfeld DA, Murphy R, Kim B, Wang L, Beuming T, Abel R, Friesner RA. Goldfeld DA, et al. J Phys Chem B. 2015 Jan 22;119(3):824-35. doi: 10.1021/jp5053612. Epub 2014 Nov 26. J Phys Chem B. 2015. PMID: 25395044
Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.
Friesner RA, Murphy RB, Repasky MP, Frye LL, Greenwood JR, Halgren TA, Sanschagrin PC, Mainz DT. Friesner RA, et al. J Med Chem. 2006 Oct 19;49(21):6177-96. doi: 10.1021/jm051256o. J Med Chem. 2006. PMID: 17034125
Long loop prediction using the protein local optimization program.
Zhu K, Pincus DL, Zhao S, Friesner RA. Zhu K, et al. Proteins. 2006 Nov 1;65(2):438-52. doi: 10.1002/prot.21040. Proteins. 2006. PMID: 16927380
WScore: A Flexible and Accurate Treatment of Explicit Water Molecules in Ligand-Receptor Docking.
Murphy RB, Repasky MP, Greenwood JR, Tubert-Brohman I, Jerome S, Annabhimoju R, Boyles NA, Schmitz CD, Abel R, Farid R, Friesner RA. Murphy RB, et al. J Med Chem. 2016 May 12;59(9):4364-84. doi: 10.1021/acs.jmedchem.6b00131. Epub 2016 Apr 22. J Med Chem. 2016. PMID: 27054459
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