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Transcription factor effector domains.
Frietze S, Farnham PJ. Frietze S, et al. Subcell Biochem. 2011;52:261-77. doi: 10.1007/978-90-481-9069-0_12. Subcell Biochem. 2011. PMID: 21557087 Free PMC article.
Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263.
Frietze S, Lan X, Jin VX, Farnham PJ. Frietze S, et al. J Biol Chem. 2010 Jan 8;285(2):1393-403. doi: 10.1074/jbc.M109.063032. Epub 2009 Nov 2. J Biol Chem. 2010. PMID: 19887448 Free PMC article.
ZNF217, a candidate breast cancer oncogene amplified at 20q13, regulates expression of the ErbB3 receptor tyrosine kinase in breast cancer cells.
Krig SR, Miller JK, Frietze S, Beckett LA, Neve RM, Farnham PJ, Yaswen PI, Sweeney CA. Krig SR, et al. Among authors: frietze s. Oncogene. 2010 Oct 7;29(40):5500-10. doi: 10.1038/onc.2010.289. Epub 2010 Jul 26. Oncogene. 2010. PMID: 20661224 Free PMC article.
Using ChIP-seq technology to identify targets of zinc finger transcription factors.
O'Geen H, Frietze S, Farnham PJ. O'Geen H, et al. Among authors: frietze s. Methods Mol Biol. 2010;649:437-55. doi: 10.1007/978-1-60761-753-2_27. Methods Mol Biol. 2010. PMID: 20680851 Free PMC article.
Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes.
O'Geen H, Lin YH, Xu X, Echipare L, Komashko VM, He D, Frietze S, Tanabe O, Shi L, Sartor MA, Engel JD, Farnham PJ. O'Geen H, et al. Among authors: frietze s. BMC Genomics. 2010 Dec 2;11:689. doi: 10.1186/1471-2164-11-689. BMC Genomics. 2010. PMID: 21126370 Free PMC article.
ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes.
Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ. Frietze S, et al. PLoS One. 2010 Dec 8;5(12):e15082. doi: 10.1371/journal.pone.0015082. PLoS One. 2010. PMID: 21170338 Free PMC article.
The transcription factor encyclopedia.
Yusuf D, Butland SL, Swanson MI, Bolotin E, Ticoll A, Cheung WA, Zhang XY, Dickman CT, Fulton DL, Lim JS, Schnabl JM, Ramos OH, Vasseur-Cognet M, de Leeuw CN, Simpson EM, Ryffel GU, Lam EW, Kist R, Wilson MS, Marco-Ferreres R, Brosens JJ, Beccari LL, Bovolenta P, Benayoun BA, Monteiro LJ, Schwenen HD, Grontved L, Wederell E, Mandrup S, Veitia RA, Chakravarthy H, Hoodless PA, Mancarelli MM, Torbett BE, Banham AH, Reddy SP, Cullum RL, Liedtke M, Tschan MP, Vaz M, Rizzino A, Zannini M, Frietze S, Farnham PJ, Eijkelenboom A, Brown PJ, Laperrière D, Leprince D, de Cristofaro T, Prince KL, Putker M, del Peso L, Camenisch G, Wenger RH, Mikula M, Rozendaal M, Mader S, Ostrowski J, Rhodes SJ, Van Rechem C, Boulay G, Olechnowicz SW, Breslin MB, Lan MS, Nanan KK, Wegner M, Hou J, Mullen RD, Colvin SC, Noy PJ, Webb CF, Witek ME, Ferrell S, Daniel JM, Park J, Waldman SA, Peet DJ, Taggart M, Jayaraman PS, Karrich JJ, Blom B, Vesuna F, O'Geen H, Sun Y, Gronostajski RM, Woodcroft MW, Hough MR, Chen E, Europe-Finner GN, Karolczak-Bayatti M, Bailey J, Hankinson O, Raman V, LeBrun DP, Biswal S, Harvey CJ, DeBruyne JP, Hogenesch JB, Hevner RF, Héligon C, Luo XM, Blank MC, Millen KJ, Sharlin DS, Forrest D, Dahlman-Wright K, Zhao C, Mishima Y, Sinha S, Chakrabarti R, Portales-Casamar E, Sladek FM, Bradley PH, Wasserman WW. Yusuf D, et al. Among authors: frietze s. Genome Biol. 2012;13(3):R24. doi: 10.1186/gb-2012-13-3-r24. Genome Biol. 2012. PMID: 22458515 Free PMC article.
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3.
Frietze S, Wang R, Yao L, Tak YG, Ye Z, Gaddis M, Witt H, Farnham PJ, Jin VX. Frietze S, et al. Genome Biol. 2012 Sep 26;13(9):R52. doi: 10.1186/gb-2012-13-9-r52. Genome Biol. 2012. PMID: 22951069 Free PMC article.
Architecture of the human regulatory network derived from ENCODE data.
Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Gerstein MB, et al. Among authors: frietze s. Nature. 2012 Sep 6;489(7414):91-100. doi: 10.1038/nature11245. Nature. 2012. PMID: 22955619 Free PMC article.
Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros.
Schjerven H, McLaughlin J, Arenzana TL, Frietze S, Cheng D, Wadsworth SE, Lawson GW, Bensinger SJ, Farnham PJ, Witte ON, Smale ST. Schjerven H, et al. Among authors: frietze s. Nat Immunol. 2013 Oct;14(10):1073-83. doi: 10.1038/ni.2707. Epub 2013 Sep 8. Nat Immunol. 2013. PMID: 24013668 Free PMC article.
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