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19 results
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Statistical assessment of crosstalk enrichment between gene groups in biological networks.
McCormack T, Frings O, Alexeyenko A, Sonnhammer EL. McCormack T, et al. Among authors: frings o. PLoS One. 2013;8(1):e54945. doi: 10.1371/journal.pone.0054945. Epub 2013 Jan 23. PLoS One. 2013. PMID: 23372799 Free PMC article.
Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features.
Lassmann T, Frings O, Sonnhammer EL. Lassmann T, et al. Among authors: frings o. Nucleic Acids Res. 2009 Feb;37(3):858-65. doi: 10.1093/nar/gkn1006. Epub 2008 Dec 22. Nucleic Acids Res. 2009. PMID: 19103665 Free PMC article.
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.
Ostlund G, Schmitt T, Forslund K, Köstler T, Messina DN, Roopra S, Frings O, Sonnhammer EL. Ostlund G, et al. Among authors: frings o. Nucleic Acids Res. 2010 Jan;38(Database issue):D196-203. doi: 10.1093/nar/gkp931. Epub 2009 Nov 5. Nucleic Acids Res. 2010. PMID: 19892828 Free PMC article.
Comparative interactomics with Funcoup 2.0.
Alexeyenko A, Schmitt T, Tjärnberg A, Guala D, Frings O, Sonnhammer EL. Alexeyenko A, et al. Among authors: frings o. Nucleic Acids Res. 2012 Jan;40(Database issue):D821-8. doi: 10.1093/nar/gkr1062. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110034 Free PMC article.
Network analysis of functional genomics data: application to avian sex-biased gene expression.
Frings O, Mank JE, Alexeyenko A, Sonnhammer EL. Frings O, et al. ScientificWorldJournal. 2012;2012:130491. doi: 10.1100/2012/130491. Epub 2012 Dec 23. ScientificWorldJournal. 2012. PMID: 23319882 Free PMC article.
MGclus: network clustering employing shared neighbors.
Frings O, Alexeyenko A, Sonnhammer EL. Frings O, et al. Mol Biosyst. 2013 Jul;9(7):1670-5. doi: 10.1039/c3mb25473a. Epub 2013 Feb 11. Mol Biosyst. 2013. PMID: 23396516
Prognostic significance in breast cancer of a gene signature capturing stromal PDGF signaling.
Frings O, Augsten M, Tobin NP, Carlson J, Paulsson J, Pena C, Olsson E, Veerla S, Bergh J, Ostman A, Sonnhammer EL. Frings O, et al. Am J Pathol. 2013 Jun;182(6):2037-47. doi: 10.1016/j.ajpath.2013.02.018. Epub 2013 Apr 10. Am J Pathol. 2013. PMID: 23583284
Stromal Hedgehog signalling is downregulated in colon cancer and its restoration restrains tumour growth.
Gerling M, Büller NV, Kirn LM, Joost S, Frings O, Englert B, Bergström Å, Kuiper RV, Blaas L, Wielenga MC, Almer S, Kühl AA, Fredlund E, van den Brink GR, Toftgård R. Gerling M, et al. Among authors: frings o. Nat Commun. 2016 Aug 5;7:12321. doi: 10.1038/ncomms12321. Nat Commun. 2016. PMID: 27492255 Free PMC article.
SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization.
Orre LM, Vesterlund M, Pan Y, Arslan T, Zhu Y, Fernandez Woodbridge A, Frings O, Fredlund E, Lehtiö J. Orre LM, et al. Among authors: frings o. Mol Cell. 2019 Jan 3;73(1):166-182.e7. doi: 10.1016/j.molcel.2018.11.035. Mol Cell. 2019. PMID: 30609389 Free article.
microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network.
Zhou Y, Frings O, Branca RM, Boekel J, le Sage C, Fredlund E, Agami R, Orre LM. Zhou Y, et al. Among authors: frings o. Oncogene. 2017 Feb 9;36(6):731-745. doi: 10.1038/onc.2016.242. Epub 2016 Aug 1. Oncogene. 2017. PMID: 27477696 Free PMC article.
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