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Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Among authors: frise e. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
Diversity and dynamics of the Drosophila transcriptome.
Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE. Brown JB, et al. Among authors: frise e. Nature. 2014 Aug 28;512(7515):393-9. doi: 10.1038/nature12962. Nature. 2014. PMID: 24670639 Free PMC article.
Spatial expression of transcription factors in Drosophila embryonic organ development.
Hammonds AS, Bristow CA, Fisher WW, Weiszmann R, Wu S, Hartenstein V, Kellis M, Yu B, Frise E, Celniker SE. Hammonds AS, et al. Among authors: frise e. Genome Biol. 2013 Dec 20;14(12):R140. doi: 10.1186/gb-2013-14-12-r140. Genome Biol. 2013. PMID: 24359758 Free PMC article.
Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks.
Wu S, Joseph A, Hammonds AS, Celniker SE, Yu B, Frise E. Wu S, et al. Among authors: frise e. Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):4290-5. doi: 10.1073/pnas.1521171113. Epub 2016 Apr 6. Proc Natl Acad Sci U S A. 2016. PMID: 27071099 Free PMC article.
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celniker SE. Kaminker JS, et al. Among authors: frise e. Genome Biol. 2002;3(12):RESEARCH0084. doi: 10.1186/gb-2002-3-12-research0084. Epub 2002 Dec 23. Genome Biol. 2002. PMID: 12537573 Free PMC article.
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images.
Mace DL, Varnado N, Zhang W, Frise E, Ohler U. Mace DL, et al. Among authors: frise e. Bioinformatics. 2010 Mar 15;26(6):761-9. doi: 10.1093/bioinformatics/btp658. Epub 2009 Nov 26. Bioinformatics. 2010. PMID: 19942587 Free PMC article.
The Drosophila Numb protein inhibits signaling of the Notch receptor during cell-cell interaction in sensory organ lineage.
Frise E, Knoblich JA, Younger-Shepherd S, Jan LY, Jan YN. Frise E, et al. Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11925-32. doi: 10.1073/pnas.93.21.11925. Proc Natl Acad Sci U S A. 1996. PMID: 8876239 Free PMC article.
A Drosophila complementary DNA resource.
Rubin GM, Hong L, Brokstein P, Evans-Holm M, Frise E, Stapleton M, Harvey DA. Rubin GM, et al. Science. 2000 Mar 24;287(5461):2222-4. doi: 10.1126/science.287.5461.2222. Science. 2000. PMID: 10731138
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.
Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, Nelson CR, Pacleb JM, Park S, Pfeiffer BD, Richards S, Sodergren EJ, Svirskas R, Tabor PE, Wan K, Stapleton M, Sutton GG, Venter C, Weinstock G, Scherer SE, Myers EW, Gibbs RA, Rubin GM. Celniker SE, et al. Genome Biol. 2002;3(12):RESEARCH0079. doi: 10.1186/gb-2002-3-12-research0079. Epub 2002 Dec 23. Genome Biol. 2002. PMID: 12537568 Free PMC article.
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