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Predicting 3D genome folding from DNA sequence with Akita.
Fudenberg G, Kelley DR, Pollard KS. Fudenberg G, et al. Nat Methods. 2020 Nov;17(11):1111-1117. doi: 10.1038/s41592-020-0958-x. Epub 2020 Oct 12. Nat Methods. 2020. PMID: 33046897 Free PMC article.
Molecular basis of CTCF binding polarity in genome folding.
Nora EP, Caccianini L, Fudenberg G, So K, Kameswaran V, Nagle A, Uebersohn A, Hajj B, Saux AL, Coulon A, Mirny LA, Pollard KS, Dahan M, Bruneau BG. Nora EP, et al. Among authors: fudenberg g. Nat Commun. 2020 Nov 5;11(1):5612. doi: 10.1038/s41467-020-19283-x. Nat Commun. 2020. PMID: 33154377 Free PMC article.
Two independent modes of chromatin organization revealed by cohesin removal.
Schwarzer W, Abdennur N, Goloborodko A, Pekowska A, Fudenberg G, Loe-Mie Y, Fonseca NA, Huber W, Haering CH, Mirny L, Spitz F. Schwarzer W, et al. Among authors: fudenberg g. Nature. 2017 Nov 2;551(7678):51-56. doi: 10.1038/nature24281. Epub 2017 Sep 27. Nature. 2017. PMID: 29094699 Free PMC article.
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.
Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, Mirny LA, Wu CT. Erceg J, et al. Among authors: fudenberg g. Nat Commun. 2019 Oct 3;10(1):4486. doi: 10.1038/s41467-019-12211-8. Nat Commun. 2019. PMID: 31582744 Free PMC article.
31 results