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pymzML--Python module for high-throughput bioinformatics on mass spectrometry data.
Bald T, Barth J, Niehues A, Specht M, Hippler M, Fufezan C. Bald T, et al. Among authors: Fufezan C. Bioinformatics. 2012 Apr 1;28(7):1052-3. doi: 10.1093/bioinformatics/bts066. Epub 2012 Feb 2. Bioinformatics. 2012. PMID: 22302572
CONTACT: christian@fufezan.net....
CONTACT: christian@fufezan.net....
pymzML v2.0: introducing a highly compressed and seekable gzip format.
Kösters M, Leufken J, Schulze S, Sugimoto K, Klein J, Zahedi RP, Hippler M, Leidel SA, Fufezan C. Kösters M, et al. Among authors: Fufezan C. Bioinformatics. 2018 Jul 15;34(14):2513-2514. doi: 10.1093/bioinformatics/bty046. Bioinformatics. 2018. PMID: 29394323
Ten Simple Rules for Taking Advantage of Git and GitHub.
Perez-Riverol Y, Gatto L, Wang R, Sachsenberg T, Uszkoreit J, Leprevost Fda V, Fufezan C, Ternent T, Eglen SJ, Katz DS, Pollard TJ, Konovalov A, Flight RM, Blin K, Vizcaíno JA. Perez-Riverol Y, et al. Among authors: Fufezan C. PLoS Comput Biol. 2016 Jul 14;12(7):e1004947. doi: 10.1371/journal.pcbi.1004947. eCollection 2016 Jul. PLoS Comput Biol. 2016. PMID: 27415786 Free PMC article. No abstract available.
The interplay of light and oxygen in the reactive oxygen stress response of Chlamydomonas reinhardtii dissected by quantitative mass spectrometry.
Barth J, Bergner SV, Jaeger D, Niehues A, Schulze S, Scholz M, Fufezan C. Barth J, et al. Among authors: Fufezan C. Mol Cell Proteomics. 2014 Apr;13(4):969-89. doi: 10.1074/mcp.M113.032771. Epub 2014 Jan 29. Mol Cell Proteomics. 2014. PMID: 24482124 Free PMC article.
Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows.
Specht M, Kuhlgert S, Fufezan C, Hippler M. Specht M, et al. Among authors: Fufezan C. Bioinformatics. 2011 Apr 15;27(8):1183-4. doi: 10.1093/bioinformatics/btr081. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21325302
AVAILABILITY AND IMPLEMENTATION: Proteomatic is implemented in C++/Qt, scripts are implemented in Ruby, Python and PHP. All source code is released under the LGPL. ...
AVAILABILITY AND IMPLEMENTATION: Proteomatic is implemented in C++/Qt, scripts are implemented in Ruby, Python and PHP. All source co …
pyQms enables universal and accurate quantification of mass spectrometry data.
Leufken J, Niehues A, Sarin LP, Wessel F, Hippler M, Leidel SA, Fufezan C. Leufken J, et al. Among authors: Fufezan C. Mol Cell Proteomics. 2017 Oct;16(10):1736-1745. doi: 10.1074/mcp.M117.068007. Epub 2017 Jul 20. Mol Cell Proteomics. 2017. PMID: 28729385 Free PMC article.
Nano LC-MS using capillary columns enables accurate quantification of modified ribonucleosides at low femtomol levels.
Sarin LP, Kienast SD, Leufken J, Ross RL, Dziergowska A, Debiec K, Sochacka E, Limbach PA, Fufezan C, Drexler HCA, Leidel SA. Sarin LP, et al. Among authors: Fufezan C. RNA. 2018 Oct;24(10):1403-1417. doi: 10.1261/rna.065482.117. Epub 2018 Jul 16. RNA. 2018. PMID: 30012570 Free PMC article.
pyGCluster, a novel hierarchical clustering approach.
Jaeger D, Barth J, Niehues A, Fufezan C. Jaeger D, et al. Among authors: Fufezan C. Bioinformatics. 2014 Mar 15;30(6):896-8. doi: 10.1093/bioinformatics/btt626. Epub 2013 Oct 31. Bioinformatics. 2014. PMID: 24177716
CONTACT: christan@fufezan.net SUPPLEMENTARY INFORMATION: Supplementary data is available at Bioinformatics online and at http://pyGCluster.github.io....
CONTACT: christan@fufezan.net SUPPLEMENTARY INFORMATION: Supplementary data is available at Bioinformatics online and at http://pyGCl …
p3d--Python module for structural bioinformatics.
Fufezan C, Specht M. Fufezan C, et al. BMC Bioinformatics. 2009 Aug 21;10:258. doi: 10.1186/1471-2105-10-258. BMC Bioinformatics. 2009. PMID: 19698094 Free PMC article.
RESULTS: p3d is an object oriented Python module that adds a simple yet powerful interface to the Python interpreter to process and analyse three dimensional protein structure files (PDB files). p3d's strength arises from the combination of a) very fast spatial access to the stru …
RESULTS: p3d is an object oriented Python module that adds a simple yet powerful interface to the Python interpreter to process and analyse …
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