Furey TS - Search Results

1

GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data.

Xiong Q, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: furey ts. Sci Rep. 2014 Sep 12;4:6347. doi: 10.1038/srep06347. Sci Rep. 2014. PMID: 25213199 Free PMC article.

2

Evidence of influence of genomic DNA sequence on human X chromosome inactivation.

Wang Z, Willard HF, Mukherjee S, Furey TS. Wang Z, et al. Among authors: furey ts. PLoS Comput Biol. 2006 Sep 1;2(9):e113. doi: 10.1371/journal.pcbi.0020113. Epub 2006 Jul 17. PLoS Comput Biol. 2006. PMID: 16948528 Free PMC article.

3

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: furey ts. Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Genome Res. 2012. PMID: 21940837 Free PMC article.

4

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

Bennett BD, Xiong Q, Mukherjee S, Furey TS. Bennett BD, et al. Among authors: furey ts. PLoS One. 2012;7(9):e44635. doi: 10.1371/journal.pone.0044635. Epub 2012 Sep 13. PLoS One. 2012. PMID: 23028573 Free PMC article.

5

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.

Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE. Winter DR, et al. Among authors: furey ts. Genome Res. 2013 Jul;23(7):1118-29. doi: 10.1101/gr.150482.112. Epub 2013 May 8. Genome Res. 2013. PMID: 23657885 Free PMC article.

6

Novel distal eQTL analysis demonstrates effect of population genetic architecture on detecting and interpreting associations.

Weiser M, Mukherjee S, Furey TS. Weiser M, et al. Among authors: furey ts. Genetics. 2014 Nov;198(3):879-93. doi: 10.1534/genetics.114.167791. Epub 2014 Sep 16. Genetics. 2014. PMID: 25230953 Free PMC article.

7

Increased colonic expression of ACE2 associates with poor prognosis in Crohn's disease.

Toyonaga T, Araba KC, Kennedy MM, Keith BP, Wolber EA, Beasley C, Steinbach EC, Schaner MR, Jain A, Long MD, Barnes EL, Herfarth HH, Isaacs KL, Hansen JJ, Kapadia MR, Guillem JG, Gulati AS, Sethupathy P, Furey TS, Ehre C, Sheikh SZ. Toyonaga T, et al. Among authors: furey ts. Sci Rep. 2021 Jun 29;11(1):13533. doi: 10.1038/s41598-021-92979-2. Sci Rep. 2021. PMID: 34188154 Free PMC article.

8

F-Seq: a feature density estimator for high-throughput sequence tags.

Boyle AP, Guinney J, Crawford GE, Furey TS. Boyle AP, et al. Among authors: furey ts. Bioinformatics. 2008 Nov 1;24(21):2537-8. doi: 10.1093/bioinformatics/btn480. Epub 2008 Sep 10. Bioinformatics. 2008. PMID: 18784119 Free PMC article.

9

MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility.

Peck BC, Weiser M, Lee SE, Gipson GR, Iyer VB, Sartor RB, Herfarth HH, Long MD, Hansen JJ, Isaacs KL, Trembath DG, Rahbar R, Sadiq TS, Furey TS, Sethupathy P, Sheikh SZ. Peck BC, et al. Among authors: furey ts. Inflamm Bowel Dis. 2015 Sep;21(9):2178-87. doi: 10.1097/MIB.0000000000000478. Inflamm Bowel Dis. 2015. PMID: 26164662 Free PMC article.

10

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

Quach B, Furey TS. Quach B, et al. Among authors: furey ts. Bioinformatics. 2017 Apr 1;33(7):956-963. doi: 10.1093/bioinformatics/btw740. Bioinformatics. 2017. PMID: 27993786 Free PMC article.

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