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Pathway databases and tools for their exploitation: benefits, current limitations and challenges.
Bauer-Mehren A, Furlong LI, Sanz F. Bauer-Mehren A, et al. Among authors: furlong li. Mol Syst Biol. 2009;5:290. doi: 10.1038/msb.2009.47. Epub 2009 Jul 28. Mol Syst Biol. 2009. PMID: 19638971 Free PMC article.
OSIRIS: a tool for retrieving literature about sequence variants.
Bonis J, Furlong LI, Sanz F. Bonis J, et al. Among authors: furlong li. Bioinformatics. 2006 Oct 15;22(20):2567-9. doi: 10.1093/bioinformatics/btl421. Epub 2006 Jul 31. Bioinformatics. 2006. PMID: 16882651
OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature.
Furlong LI, Dach H, Hofmann-Apitius M, Sanz F. Furlong LI, et al. BMC Bioinformatics. 2008 Feb 5;9:84. doi: 10.1186/1471-2105-9-84. BMC Bioinformatics. 2008. PMID: 18251998 Free PMC article.
From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways.
Bauer-Mehren A, Furlong LI, Rautschka M, Sanz F. Bauer-Mehren A, et al. Among authors: furlong li. BMC Bioinformatics. 2009 Aug 27;10 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2105-10-S8-S6. BMC Bioinformatics. 2009. PMID: 19758470 Free PMC article.
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks.
Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI. Bauer-Mehren A, et al. Among authors: furlong li. Bioinformatics. 2010 Nov 15;26(22):2924-6. doi: 10.1093/bioinformatics/btq538. Epub 2010 Sep 21. Bioinformatics. 2010. PMID: 20861032
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases.
Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI. Bauer-Mehren A, et al. Among authors: furlong li. PLoS One. 2011;6(6):e20284. doi: 10.1371/journal.pone.0020284. Epub 2011 Jun 14. PLoS One. 2011. PMID: 21695124 Free PMC article.
Automatic filtering and substantiation of drug safety signals.
Bauer-Mehren A, van Mullingen EM, Avillach P, Carrascosa Mdel C, Garcia-Serna R, Piñero J, Singh B, Lopes P, Oliveira JL, Diallo G, Ahlberg Helgee E, Boyer S, Mestres J, Sanz F, Kors JA, Furlong LI. Bauer-Mehren A, et al. Among authors: furlong li. PLoS Comput Biol. 2012;8(4):e1002457. doi: 10.1371/journal.pcbi.1002457. Epub 2012 Apr 5. PLoS Comput Biol. 2012. PMID: 22496632 Free PMC article.
Human diseases through the lens of network biology.
Furlong LI. Furlong LI. Trends Genet. 2013 Mar;29(3):150-9. doi: 10.1016/j.tig.2012.11.004. Epub 2012 Dec 7. Trends Genet. 2013. PMID: 23219555 Review.
Improving data and knowledge management to better integrate health care and research.
Cases M, Furlong LI, Albanell J, Altman RB, Bellazzi R, Boyer S, Brand A, Brookes AJ, Brunak S, Clark TW, Gea J, Ghazal P, Graf N, Guigó R, Klein TE, López-Bigas N, Maojo V, Mons B, Musen M, Oliveira JL, Rowe A, Ruch P, Shabo A, Shortliffe EH, Valencia A, van der Lei J, Mayer MA, Sanz F. Cases M, et al. Among authors: furlong li. J Intern Med. 2013 Oct;274(4):321-8. doi: 10.1111/joim.12105. Epub 2013 Jul 15. J Intern Med. 2013. PMID: 23808970 Free PMC article. No abstract available.
Gathering and exploring scientific knowledge in pharmacovigilance.
Lopes P, Nunes T, Campos D, Furlong LI, Bauer-Mehren A, Sanz F, Carrascosa MC, Mestres J, Kors J, Singh B, van Mulligen E, Van der Lei J, Diallo G, Avillach P, Ahlberg E, Boyer S, Diaz C, Oliveira JL. Lopes P, et al. Among authors: furlong li. PLoS One. 2013 Dec 11;8(12):e83016. doi: 10.1371/journal.pone.0083016. eCollection 2013. PLoS One. 2013. PMID: 24349421 Free PMC article.
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