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The modelling and enhancement of water hydrodynamics: general discussion.
Baaden M, Borthakur MP, Casanova S, Coalson R, Freger V, Gonzalez M, Góra A, Hinds B, Hirunpinyopas W, Hummer G, Kumar M, Lynch C, Murail S, Noy A, Sansom M, Song Q, Vashisth H, Vögele M. Baaden M, et al. Among authors: gora a. Faraday Discuss. 2018 Sep 28;209(0):273-285. doi: 10.1039/c8fd90021c. Faraday Discuss. 2018. PMID: 30215654 No abstract available.
Structure and function of natural proteins for water transport: general discussion.
Baaden M, Barboiu M, Bill RM, Casanova S, Chen CL, Conner M, Freger V, Gong B, Góra A, Hinds B, Horner A, Hummer G, Kumar M, Lokesh M, Mitra S, Noy A, Pohl P, Sadet A, Sansom M, Törnroth-Horsefield S, Vashisth H. Baaden M, et al. Among authors: gora a. Faraday Discuss. 2018 Sep 28;209(0):83-95. doi: 10.1039/c8fd90019a. Faraday Discuss. 2018. PMID: 30215655 No abstract available.
Distant Non-Obvious Mutations Influence the Activity of a Hyperthermophilic Pyrococcusfuriosus Phosphoglucose Isomerase.
Subramanian K, Mitusińska K, Raedts J, Almourfi F, Joosten HJ, Hendriks S, Sedelnikova SE, Kengen SWM, Hagen WR, Góra A, Martins Dos Santos VAP, Baker PJ, van der Oost J, Schaap PJ. Subramanian K, et al. Among authors: gora a. Biomolecules. 2019 May 31;9(6):212. doi: 10.3390/biom9060212. Biomolecules. 2019. PMID: 31159273 Free PMC article.
Applications of water molecules for analysis of macromolecule properties.
Mitusińska K, Raczyńska A, Bzówka M, Bagrowska W, Góra A. Mitusińska K, et al. Among authors: gora a. Comput Struct Biotechnol J. 2020 Feb 12;18:355-365. doi: 10.1016/j.csbj.2020.02.001. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32123557 Free PMC article. Review.
AQUA-DUCT: a ligands tracking tool.
Magdziarz T, Mitusinska K, Goldowska S, Pluciennik A, Stolarczyk M, Lugowska M, Góra A. Magdziarz T, et al. Among authors: gora a. Bioinformatics. 2017 Jul 1;33(13):2045-2046. doi: 10.1093/bioinformatics/btx125. Bioinformatics. 2017. PMID: 28334160
RESULTS: AQUA-DUCT is an easy-to-use tool that facilitates analysis of the behaviour of molecules that penetrate any selected region in a protein. It can be used for any type of molecules, e.g. water, oxygen, carbon dioxide, organic solvents, ions. AVAILABILITY AND IMPLEME …
RESULTS: AQUA-DUCT is an easy-to-use tool that facilitates analysis of the behaviour of molecules that penetrate any selected region in a …
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.
Chovancova E, Pavelka A, Benes P, Strnad O, Brezovsky J, Kozlikova B, Gora A, Sustr V, Klvana M, Medek P, Biedermannova L, Sochor J, Damborsky J. Chovancova E, et al. Among authors: gora a. PLoS Comput Biol. 2012;8(10):e1002708. doi: 10.1371/journal.pcbi.1002708. Epub 2012 Oct 18. PLoS Comput Biol. 2012. PMID: 23093919 Free PMC article.
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.
Kozlikova B, Sebestova E, Sustr V, Brezovsky J, Strnad O, Daniel L, Bednar D, Pavelka A, Manak M, Bezdeka M, Benes P, Kotry M, Gora A, Damborsky J, Sochor J. Kozlikova B, et al. Among authors: gora a. Bioinformatics. 2014 Sep 15;30(18):2684-5. doi: 10.1093/bioinformatics/btu364. Epub 2014 May 29. Bioinformatics. 2014. PMID: 24876375
88 results