GM-56609/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
1999	3
2000	2
2001	1
2003	1
2005	1
2021	0

1

Trapping HIV-1 reverse transcriptase before and after translocation on DNA.

Sarafianos SG, Clark AD Jr, Tuske S, Squire CJ, Das K, Sheng D, Ilankumaran P, Ramesha AR, Kroth H, Sayer JM, Jerina DM, Boyer PL, Hughes SH, Arnold E. Sarafianos SG, et al. J Biol Chem. 2003 May 2;278(18):16280-8. doi: 10.1074/jbc.M212911200. Epub 2003 Jan 28. J Biol Chem. 2003. PMID: 12554739 Free article.

2

Hierarchical database screenings for HIV-1 reverse transcriptase using a pharmacophore model, rigid docking, solvation docking, and MM-PB/SA.

Wang J, Kang X, Kuntz ID, Kollman PA. Wang J, et al. J Med Chem. 2005 Apr 7;48(7):2432-44. doi: 10.1021/jm049606e. J Med Chem. 2005. PMID: 15801834

3

Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent model.

Wang W, Kollman PA. Wang W, et al. J Mol Biol. 2000 Nov 3;303(4):567-82. doi: 10.1006/jmbi.2000.4057. J Mol Biol. 2000. PMID: 11054292

4

Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA.

Wang J, Morin P, Wang W, Kollman PA. Wang J, et al. J Am Chem Soc. 2001 Jun 6;123(22):5221-30. doi: 10.1021/ja003834q. J Am Chem Soc. 2001. PMID: 11457384

5

Analysis of mutations at positions 115 and 116 in the dNTP binding site of HIV-1 reverse transcriptase.

Boyer PL, Sarafianos SG, Arnold E, Hughes SH. Boyer PL, et al. Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3056-61. doi: 10.1073/pnas.97.7.3056. Proc Natl Acad Sci U S A. 2000. PMID: 10737786 Free PMC article.

6

What determines the van der Waals coefficient beta in the LIE (linear interaction energy) method to estimate binding free energies using molecular dynamics simulations?

Wang W, Wang J, Kollman PA. Wang W, et al. Proteins. 1999 Feb 15;34(3):395-402. Proteins. 1999. PMID: 10024025

7

Flexible ligand docking: a multistep strategy approach.

Wang J, Kollman PA, Kuntz ID. Wang J, et al. Proteins. 1999 Jul 1;36(1):1-19. Proteins. 1999. PMID: 10373002

8

Ranking ligand binding affinities with avidin: a molecular dynamics-based interaction energy study.

Wang J, Dixon R, Kollman PA. Wang J, et al. Proteins. 1999 Jan 1;34(1):69-81. Proteins. 1999. PMID: 10336384

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

Search Page

Search Results