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Year Number of Results
2003 1
2004 2
2005 3
2006 2
2007 2
2008 3
2021 0
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12 results
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Page 1
Sampling protein conformations and pathways.
Lei M, Zavodszky MI, Kuhn LA, Thorpe MF. Lei M, et al. J Comput Chem. 2004 Jul 15;25(9):1133-48. doi: 10.1002/jcc.20041. J Comput Chem. 2004. PMID: 15116357
Constrained geometric simulation of diffusive motion in proteins.
Wells S, Menor S, Hespenheide B, Thorpe MF. Wells S, et al. Phys Biol. 2005 Nov 9;2(4):S127-36. doi: 10.1088/1478-3975/2/4/S07. Phys Biol. 2005. PMID: 16280618
Target flexibility: an emerging consideration in drug discovery and design.
Cozzini P, Kellogg GE, Spyrakis F, Abraham DJ, Costantino G, Emerson A, Fanelli F, Gohlke H, Kuhn LA, Morris GM, Orozco M, Pertinhez TA, Rizzi M, Sotriffer CA. Cozzini P, et al. J Med Chem. 2008 Oct 23;51(20):6237-55. doi: 10.1021/jm800562d. Epub 2008 Sep 12. J Med Chem. 2008. PMID: 18785728 Free PMC article. No abstract available.
Docking of photosystem I subunit C using a constrained geometric simulation.
Jolley CC, Wells SA, Hespenheide BM, Thorpe MF, Fromme P. Jolley CC, et al. J Am Chem Soc. 2006 Jul 12;128(27):8803-12. doi: 10.1021/ja0587749. J Am Chem Soc. 2006. PMID: 16819873
Modeling correlated main-chain motions in proteins for flexible molecular recognition.
Zavodszky MI, Lei M, Thorpe MF, Day AR, Kuhn LA. Zavodszky MI, et al. Proteins. 2004 Nov 1;57(2):243-61. doi: 10.1002/prot.20179. Proteins. 2004. PMID: 15340912
The structure of urease activation complexes examined by flexibility analysis, mutagenesis, and small-angle X-ray scattering.
Quiroz-Valenzuela S, Sukuru SC, Hausinger RP, Kuhn LA, Heller WT. Quiroz-Valenzuela S, et al. Arch Biochem Biophys. 2008 Dec 1;480(1):51-7. doi: 10.1016/j.abb.2008.09.004. Epub 2008 Sep 18. Arch Biochem Biophys. 2008. PMID: 18823937 Free PMC article.
Comment on elastic network models and proteins.
Thorpe MF. Thorpe MF. Phys Biol. 2007 Apr 3;4(1):60-3; discussion 64-5. doi: 10.1088/1478-3975/4/1/N01. Phys Biol. 2007. PMID: 17406086
Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis.
Zavodszky MI, Kuhn LA. Zavodszky MI, et al. Protein Sci. 2005 Apr;14(4):1104-14. doi: 10.1110/ps.041153605. Protein Sci. 2005. PMID: 15772311 Free PMC article.
Protein flexibility using constraints from molecular dynamics simulations.
Mamonova T, Hespenheide B, Straub R, Thorpe MF, Kurnikova M. Mamonova T, et al. Phys Biol. 2005 Nov 9;2(4):S137-47. doi: 10.1088/1478-3975/2/4/S08. Phys Biol. 2005. PMID: 16280619
Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.
Jolley CC, Wells SA, Fromme P, Thorpe MF. Jolley CC, et al. Biophys J. 2008 Mar 1;94(5):1613-21. doi: 10.1529/biophysj.107.115949. Epub 2007 Nov 9. Biophys J. 2008. PMID: 17993504 Free PMC article.
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