GM068726/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2003	1
2004	1
2005	2
2006	3
2007	4
2008	4
2009	2
2010	1
2022	0

1

Statistical and Bayesian approaches to RNA secondary structure prediction.

Ding Y. Ding Y. RNA. 2006 Mar;12(3):323-31. doi: 10.1261/rna.2274106. RNA. 2006. PMID: 16495231 Free PMC article. Review.

2

Potent effect of target structure on microRNA function.

Long D, Lee R, Williams P, Chan CY, Ambros V, Ding Y. Long D, et al. Nat Struct Mol Biol. 2007 Apr;14(4):287-94. doi: 10.1038/nsmb1226. Epub 2007 Apr 1. Nat Struct Mol Biol. 2007. PMID: 17401373

3

mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.

Hammell M, Long D, Zhang L, Lee A, Carmack CS, Han M, Ding Y, Ambros V. Hammell M, et al. Nat Methods. 2008 Sep;5(9):813-9. doi: 10.1038/nmeth.1247. Nat Methods. 2008. PMID: 19160516 Free PMC article.

4

Effect of target secondary structure on RNAi efficiency.

Shao Y, Chan CY, Maliyekkel A, Lawrence CE, Roninson IB, Ding Y. Shao Y, et al. RNA. 2007 Oct;13(10):1631-40. doi: 10.1261/rna.546207. Epub 2007 Aug 7. RNA. 2007. PMID: 17684233 Free PMC article.

5

A structural analysis of in vitro catalytic activities of hammerhead ribozymes.

Shao Y, Wu S, Chan CY, Klapper JR, Schneider E, Ding Y. Shao Y, et al. BMC Bioinformatics. 2007 Nov 30;8:469. doi: 10.1186/1471-2105-8-469. BMC Bioinformatics. 2007. PMID: 18053134 Free PMC article.

6

Analysis of microRNA-target interactions by a target structure based hybridization model.

Long D, Chan CY, Ding Y. Long D, et al. Pac Symp Biocomput. 2008:64-74. Pac Symp Biocomput. 2008. PMID: 18232104 Free article.

7

Function-based gene identification using enzymatically generated normalized shRNA library and massive parallel sequencing.

Shtutman M, Maliyekkel A, Shao Y, Carmack CS, Baig M, Warholic N, Cole K, Broude EV, Harkins TT, Ding Y, Roninson IB. Shtutman M, et al. Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7377-82. doi: 10.1073/pnas.1003055107. Epub 2010 Apr 5. Proc Natl Acad Sci U S A. 2010. PMID: 20368428 Free PMC article.

8

A structural interpretation of the effect of GC-content on efficiency of RNA interference.

Chan CY, Carmack CS, Long DD, Maliyekkel A, Shao Y, Roninson IB, Ding Y. Chan CY, et al. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S33. doi: 10.1186/1471-2105-10-S1-S33. BMC Bioinformatics. 2009. PMID: 19208134 Free PMC article.

9

Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation.

Shao Y, Wu Y, Chan CY, McDonough K, Ding Y. Shao Y, et al. Nucleic Acids Res. 2006;34(19):5660-9. doi: 10.1093/nar/gkl715. Epub 2006 Oct 11. Nucleic Acids Res. 2006. PMID: 17038332 Free PMC article.

10

Clustering of RNA secondary structures with application to messenger RNAs.

Ding Y, Chan CY, Lawrence CE. Ding Y, et al. J Mol Biol. 2006 Jun 9;359(3):554-71. doi: 10.1016/j.jmb.2006.01.056. Epub 2006 Feb 2. J Mol Biol. 2006. PMID: 16631786

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