GM704403/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2006	3
2008	3
2009	1
2010	2
2011	4
2012	3
2024	0

1

Genome-wide analysis of Polycomb targets in Drosophila melanogaster.

Schwartz YB, Kahn TG, Nix DA, Li XY, Bourgon R, Biggin M, Pirrotta V. Schwartz YB, et al. Nat Genet. 2006 Jun;38(6):700-5. doi: 10.1038/ng1817. Epub 2006 May 28. Nat Genet. 2006. PMID: 16732288

2

High-throughput SELEX determination of DNA sequences bound by transcription factors in vitro.

Ogawa N, Biggin MD. Ogawa N, et al. Methods Mol Biol. 2012;786:51-63. doi: 10.1007/978-1-61779-292-2_3. Methods Mol Biol. 2012. PMID: 21938619

3

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development.

Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, Canfield TK, Giste E, Fisher W, Hammonds A, Celniker SE, Biggin MD, Stamatoyannopoulos JA. Thomas S, et al. Genome Biol. 2011;12(5):R43. doi: 10.1186/gb-2011-12-5-r43. Epub 2011 May 11. Genome Biol. 2011. PMID: 21569360 Free PMC article.

4

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data.

Aswani A, Keränen SV, Brown J, Fowlkes CC, Knowles DW, Biggin MD, Bickel P, Tomlin CJ. Aswani A, et al. BMC Bioinformatics. 2010 Aug 4;11:413. doi: 10.1186/1471-2105-11-413. BMC Bioinformatics. 2010. PMID: 20684787 Free PMC article.

5

NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila.

Lee C, Li X, Hechmer A, Eisen M, Biggin MD, Venters BJ, Jiang C, Li J, Pugh BF, Gilmour DS. Lee C, et al. Mol Cell Biol. 2008 May;28(10):3290-300. doi: 10.1128/MCB.02224-07. Epub 2008 Mar 10. Mol Cell Biol. 2008. PMID: 18332113 Free PMC article.

6

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. Fowlkes CC, et al. Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053. Cell. 2008. PMID: 18423206 Free article.

7

A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.

Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH. Fowlkes CC, et al. PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27. PLoS Genet. 2011. PMID: 22046143 Free PMC article.

8

Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.

Kaplan T, Li XY, Sabo PJ, Thomas S, Stamatoyannopoulos JA, Biggin MD, Eisen MB. Kaplan T, et al. PLoS Genet. 2011 Feb 3;7(2):e1001290. doi: 10.1371/journal.pgen.1001290. PLoS Genet. 2011. PMID: 21304941 Free PMC article.

9

The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding.

Li XY, Thomas S, Sabo PJ, Eisen MB, Stamatoyannopoulos JA, Biggin MD. Li XY, et al. Genome Biol. 2011;12(4):R34. doi: 10.1186/gb-2011-12-4-r34. Epub 2011 Apr 7. Genome Biol. 2011. PMID: 21473766 Free PMC article.

10

Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species.

Bradley RK, Li XY, Trapnell C, Davidson S, Pachter L, Chu HC, Tonkin LA, Biggin MD, Eisen MB. Bradley RK, et al. PLoS Biol. 2010 Mar 23;8(3):e1000343. doi: 10.1371/journal.pbio.1000343. PLoS Biol. 2010. PMID: 20351773 Free PMC article.

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